BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eace_0015_orf1
         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_...    39     0.27 
gi|326331763|ref|ZP_08198051.1| phosphonate ABC transporter, ATP...    35     2.4  
gi|339620143|gb|EGQ24714.1| 4-diphosphocytidyl-2-C-methyl-D-eryt...    35     2.7  
gi|240169601|ref|ZP_04748260.1| multi-functional membrane-associ...    35     5.0  

>gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
 gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
          Length = 250

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 36  RGKVMQSVSGGGREPSLTIKCESP-ELAL--ITKPNSAARPTMPASQIGMLFSTTFLTPR 92
           RG+ MQ  S GG+E +L    E P +L L  IT P+ +      A +        FLT  
Sbjct: 41  RGQEMQVTSAGGQEEALQKLQERPYDLVLLDITLPDGSGYSVCNAVKRDYQTPVIFLTAS 100

Query: 93  RSMNGSVSASSIASTKFSCKPLAPRNSIVQVRS 125
              N  V+   + +  +  KP  PR  + ++R+
Sbjct: 101 GDENSVVTGFDLGAEDYIAKPFRPRELVSRIRN 133


>gi|326331763|ref|ZP_08198051.1| phosphonate ABC transporter, ATP-binding protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325950562|gb|EGD42614.1| phosphonate ABC transporter, ATP-binding protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 265

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 37  GKVMQSVSGGGREPSLTIKC----ESPELALITKPNSAARPTMPASQIGMLFSTTFLTPR 92
           G+V+  +   G   S +++C    E P+   IT     ARP      + M+F    L PR
Sbjct: 37  GEVVSLLGANGSGKSTSLRCVVGLERPDAGTITVDGVTARPAEAMPTVAMVFQKIHLVPR 96

Query: 93  RSMNGSVSASSIASTKFS 110
           RS+  +V A ++     S
Sbjct: 97  RSVLDNVCAGALGRLGLS 114


>gi|339620143|gb|EGQ24714.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase [Sporosarcina
           newyorkensis 2681]
          Length = 226

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 24/107 (22%)

Query: 4   RANSRTSRYLPSIGAL----WRPSKFLRTPYC-------------------ARNDRGKVM 40
           R  +  ++    IG L       S FL  P+C                   AR+D+GK +
Sbjct: 15  RMGAGQNKLFLEIGGLPILYHTVSIFLEDPHCEEIIIAVKPEEQTVIKEMLARSDKGKTI 74

Query: 41  QSVSGGG-REPSLTIKCESPELALITKPNSAARPTMPASQIGMLFST 86
             V GGG R+ S+    E+ E   I   + AARP + +S I  L ST
Sbjct: 75  TFVKGGGERQNSVAACIETYEGNGIVLVHDAARPFLDSSVIRKLVST 121


>gi|240169601|ref|ZP_04748260.1| multi-functional membrane-associated mycocerosic acid synthase mas
            [Mycobacterium kansasii ATCC 12478]
          Length = 2101

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 1    TIIRANSRTSRYLPSIGALWRPSKFLRTPYCARNDRGKVMQSVSGGGREPS 51
            T++R +   + Y+P IGA W P    R+P+      G++ QS   G R PS
Sbjct: 1960 TLLRYDRAYTGYIPIIGAPWLPDLVRRSPW------GEMFQSAGQGSRGPS 2004


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.317    0.128    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,209,137,596
Number of extensions: 43624635
Number of successful extensions: 100288
Number of sequences better than 10.0: 18
Number of HSP's gapped: 101550
Number of HSP's successfully gapped: 18
Length of query: 133
Length of database: 5,058,227,080
Length adjustment: 98
Effective length of query: 35
Effective length of database: 3,610,009,344
Effective search space: 126350327040
Effective search space used: 126350327040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)