bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_4
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 80.9 2e-15
cpt:CpB0227 hypothetical protein 74.3 4e-13
cpj:CPj0222 hypothetical protein 74.3 4e-13
cpa:CP0543 hypothetical protein 74.3 4e-13
cpn:CPn0222 hypothetical protein 74.3 4e-13
xcp:XCR_2349 filamentous phage phiLf replication initiation pr... 41.6 0.23
xcv:XCV2471 filamentous phage phiLf replication initiation pro... 41.6 0.24
xcb:XC_2107 replication initiation protein 41.6 0.25
xcc:XCC2075 gII; replication initiation protein 41.6 0.25
xcc:XCC2058 gII; replication initiation protein 41.6 0.27
efd:EFD32_2281 hypothetical protein 41.2 0.29
xom:XOO_2146 replication initiation protein 41.2 0.32
rus:RBI_I01590 hypothetical phage protein 39.7 0.73
vfu:vfu_A02526 phage protein 40.4 0.74
eau:DI57_21560 replication protein 39.3 1.8
sri:SELR_11130 hypothetical protein 38.5 1.8
pse:NH8B_2279 putative phage replication protein 38.5 2.1
ecm:EcSMS35_4793 hypothetical protein 38.1 2.1
gap:GAPWK_1390 Phage replication protein 38.9 2.5
der:Dere_GG24836 GG24836 gene product from transcript GG24836-RA 37.7 2.6
ecz:ECS88_4652 hypothetical protein 37.7 3.1
ecq:ECED1_3481 hypothetical protein 37.7 3.1
ecv:APECO1_2309 hypothetical protein 37.7 3.1
ecc:c4558 hypothetical protein 37.7 3.5
senn:SN31241_6720 Intergenic-region protein 37.4 3.7
eck:EC55989_4880 hypothetical protein 37.4 3.8
vcj:VCD_002162 replication gene A protein 38.1 3.9
cmk:103184573 ADNP homeobox protein 2-like 38.1 4.1
bbf:BBB_0915 anaerobic C4-dicarboxylate transport protein 35.8 4.6
bbi:BBIF_0935 hypothetical protein 35.8 4.6
fpr:FP2_16510 hypothetical protein 37.4 4.6
amg:AMEC673_10165 prophage 37.0 4.8
sbg:SBG_2836 gpA; bacteriophage replication protein 37.7 5.5
mhal:N220_06095 replication protein 37.7 6.0
mhao:J451_01365 replication protein 37.7 6.0
mhae:F382_02015 replication protein 37.7 6.0
mhx:MHH_c18950 repA; replication protein A (EC:3.1.-.-) 37.7 6.0
mhq:D650_12680 Replication protein A 37.7 6.0
vcr:VC395_A0202 rep 37.4 6.6
vco:VC0395_1066 hypothetical protein 37.4 7.3
ddc:Dd586_0405 hypothetical protein 36.2 8.8
cmk:103184537 ADNP homeobox protein 2-like 37.0 9.1
kpm:KPHS_40100 gp36 37.0 9.2
kpn:KPN_04887 putative prophage protein 37.0 9.5
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (63%), Gaps = 6/102 (6%)
Query 40 FLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 98
++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL
Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77
Query 99 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNF 140
F KRLR ++ H +RY EYG +RPHYH++++N+
Sbjct 78 FLKRLRDRIS----PHKIRYFGCGEYGTKLQRPHYHLLIFNY 115
> cpt:CpB0227 hypothetical protein
Length=113
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (60%), Gaps = 6/99 (6%)
Query 40 FLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 98
++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL
Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77
Query 99 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL 137
F KRLR + H +RY YG +RPHYH++L
Sbjct 78 FLKRLRKMIS----PHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (60%), Gaps = 6/99 (6%)
Query 40 FLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 98
++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL
Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77
Query 99 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL 137
F KRLR + H +RY YG +RPHYH++L
Sbjct 78 FLKRLRKMIS----PHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (60%), Gaps = 6/99 (6%)
Query 40 FLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 98
++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL
Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77
Query 99 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL 137
F KRLR + H +RY YG +RPHYH++L
Sbjct 78 FLKRLRKMIS----PHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (60%), Gaps = 6/99 (6%)
Query 40 FLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 98
++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL
Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77
Query 99 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL 137
F KRLR + H +RY YG +RPHYH++L
Sbjct 78 FLKRLRKMIS----PHKIRYFECGAYGTKLQRPHYHLLL 112
> xcp:XCR_2349 filamentous phage phiLf replication initiation
protein II
Length=346
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (48%), Gaps = 20/96 (21%)
Query 49 ALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLD 108
A ++++A++ SFR YF+TLTY + + P ++ FKR+R +
Sbjct 141 ARLHDQEAKKGSFRGAW---------YFLTLTYRD----GSDSSPRDVSELFKRMRGHFN 187
Query 109 R------RGISHNLRYIAVSEYGHWSKRPHYHIILW 138
R R + RY+ V E RPHYH++LW
Sbjct 188 RLKSGRARWNRESFRYVWVGELTQ-RFRPHYHVMLW 222
> xcv:XCV2471 filamentous phage phiLf replication initiation protein
II
Length=346
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (48%), Gaps = 20/96 (21%)
Query 49 ALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLD 108
A ++++A++ SFR YF+TLTY + + P ++ FKR+R +
Sbjct 141 ARLHDQEAKKGSFRGAW---------YFLTLTYRD----GSDSSPRDVSELFKRMRGHFN 187
Query 109 R------RGISHNLRYIAVSEYGHWSKRPHYHIILW 138
R R + RY+ V E RPHYH++LW
Sbjct 188 RLKSGRARWNRESFRYVWVGELTQ-RFRPHYHVMLW 222
> xcb:XC_2107 replication initiation protein
Length=346
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (48%), Gaps = 20/96 (21%)
Query 49 ALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLD 108
A ++++A++ SFR YF+TLTY + + P ++ FKR+R +
Sbjct 141 ARLHDQEAKKGSFRGAW---------YFLTLTYRD----GSDSSPRDVSELFKRMRGHFN 187
Query 109 R------RGISHNLRYIAVSEYGHWSKRPHYHIILW 138
R R + RY+ V E RPHYH++LW
Sbjct 188 RLKSGRARWNRESFRYVWVGELTQ-RFRPHYHVMLW 222
> xcc:XCC2075 gII; replication initiation protein
Length=346
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (48%), Gaps = 20/96 (21%)
Query 49 ALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLD 108
A ++++A++ SFR YF+TLTY + + P ++ FKR+R +
Sbjct 141 ARLHDQEAKKGSFRGAW---------YFLTLTYRD----GSDSSPRDVSELFKRMRGHFN 187
Query 109 R------RGISHNLRYIAVSEYGHWSKRPHYHIILW 138
R R + RY+ V E RPHYH++LW
Sbjct 188 RLKSGRARWNRESFRYVWVGELTQ-RFRPHYHVMLW 222
> xcc:XCC2058 gII; replication initiation protein
Length=346
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (48%), Gaps = 20/96 (21%)
Query 49 ALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLD 108
A ++++A++ SFR YF+TLTY + + P ++ FKR+R +
Sbjct 141 ARLHDQEAKKGSFRGAW---------YFLTLTYRD----GSDSSPRDVSELFKRMRGHFN 187
Query 109 R------RGISHNLRYIAVSEYGHWSKRPHYHIILW 138
R R + RY+ V E RPHYH++LW
Sbjct 188 RLKSGRARWNRESFRYVWVGELTQ-RFRPHYHVMLW 222
> efd:EFD32_2281 hypothetical protein
Length=271
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (49%), Gaps = 20/123 (16%)
Query 50 LCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLP---KNGVFPEEIQLFFKRLRTK 106
L N+K++ +W A+ ++ K Y++TLTY+ +P K +++ F +++R
Sbjct 47 LTNDKRSYKWMRLAMNGNFF--KGDYYLTLTYDEGDIPPPEKAEEAKKDLSNFLRKVRNL 104
Query 107 LDRRGISHNLRYIAVSEY-----GHWSKRPHYHIILWNFPDNFESAYSRLTLIESCWRRP 161
+ + L+YI V EY G++ KR H+H+++ +R IE CW
Sbjct 105 YKK--VDKELKYIWVMEYELDQEGNYLKRVHFHLVM-------NQGVNR-DAIEECWSHG 154
Query 162 TGE 164
G+
Sbjct 155 RGK 157
> xom:XOO_2146 replication initiation protein
Length=346
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (48%), Gaps = 20/96 (21%)
Query 49 ALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLD 108
A ++++A++ SFR YF+TLTY + + P ++ FKR+R +
Sbjct 141 ARLHDQEAKKGSFRGAW---------YFLTLTYRD----GSDSSPGDVSELFKRMRGHFN 187
Query 109 R------RGISHNLRYIAVSEYGHWSKRPHYHIILW 138
R R + RY+ V E RPHYH++LW
Sbjct 188 RLKSGRARWNRESFRYVWVGELTQ-RFRPHYHVMLW 222
> rus:RBI_I01590 hypothetical phage protein
Length=271
Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (60%), Gaps = 2/62 (3%)
Query 77 ITLTYNNEHLPKNG-VFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHI 135
I LTYN +HLP N ++ + F RL+ + G+ +L+Y++V+E G + R H+H
Sbjct 69 IHLTYNGDHLPGNDEAVKKQFRNFIARLKRYRKKHGLP-SLKYMSVTERGSRNGRYHHHT 127
Query 136 IL 137
I+
Sbjct 128 IV 129
> vfu:vfu_A02526 phage protein
Length=967
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/101 (35%), Positives = 50/101 (50%), Gaps = 24/101 (24%)
Query 63 ALCESYTS-----NKQAYFITLT----YNNEH-----LPK-NGVFPEEIQLF----FKRL 103
A C Y N Q F+TLT Y+N + +P NG P++ Q + ++R+
Sbjct 373 ARCRGYEDIGSLLNLQGMFLTLTAPGKYHNSYQSGGFIPHWNGASPKQTQGYLNNVWQRI 432
Query 104 RTKLDRRGIS-HNLRYIAVSEYGHWSKRPHYHIILWNFPDN 143
R KLDR GI LR V+E H PH+H++LW P +
Sbjct 433 RAKLDREGIRWFGLR---VAEPHH-DGTPHWHLLLWVRPQD 469
> eau:DI57_21560 replication protein
Length=729
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (41%), Gaps = 44/157 (28%)
Query 23 IDKY--TIVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCES-------YTSNKQ 73
I+KY ++ NPA +C L + F +CE+ YT
Sbjct 281 IEKYDSSVANPA------------IRRCELMTRIRG----FENICEALGYVGEFYTLTAP 324
Query 74 A-YFITLTYNNEHLPKNGVFPEEIQLFFKRL----RTKLDRRGISHNLRYIAVSEYGHWS 128
A Y TL + NG P + Q++F RL R KL R G + I V+E H
Sbjct 325 AQYHATLKSGFPNAKWNGASPADTQIYFTRLWARIRAKLHRDG--RRIFGIRVAEPHH-D 381
Query 129 KRPHYHIILWNFPDNFESAYSRLTLIESCWRRPTGEY 165
PH+H++++ P++ E C RR G+Y
Sbjct 382 GTPHWHMLMFMLPEDVE-----------CVRRIIGDY 407
> sri:SELR_11130 hypothetical protein
Length=288
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (51%), Gaps = 4/114 (4%)
Query 25 KYTIVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNE 84
KYT G K NEK+++++ F AL S +K +T+TY++E
Sbjct 27 KYTERGTRQGRGRQRKFEASTPKQRNLNEKRSKRY-FEALVLS-NFHKDDLHVTVTYDDE 84
Query 85 HLPKN-GVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL 137
+ P + + + ++ + +RL + G+S ++RY+ V+E G + R H+H I+
Sbjct 85 NRPADLKMAMKAVENYIRRLNYTRSKAGLS-SVRYVCVTEEGATNGRIHHHFIM 137
> pse:NH8B_2279 putative phage replication protein
Length=351
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/114 (30%), Positives = 51/114 (45%), Gaps = 9/114 (8%)
Query 28 IVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCESYTSN---KQAYFITLTYNNE 84
+V T T + +V + L K+A S R E+ T ++ +TLTY ++
Sbjct 42 LVLTETSATQDGWHLVDAQRARLKRMKQAVITSGRLHQENATRRGFLTKSAMLTLTYRDD 101
Query 85 HLPKNGVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILW 138
P + +RLR L RRG+ RY+ V E RPHYH+I+W
Sbjct 102 ----VEWSPRHVSDLLERLRKWLKRRGVK-ACRYVWVLELTK-RGRPHYHLIVW 149
> ecm:EcSMS35_4793 hypothetical protein
Length=243
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query 100 FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL------WNFPDNFESAYSRLTL 153
++R + + ++R + LRY E+G R HYH+IL W P +F S TL
Sbjct 69 YQRKKRRANKRVRATTLRYFWCREFGKEKGRKHYHVILLLNKDTWCSPGDFTVPSSLATL 128
Query 154 IESCW 158
I+ W
Sbjct 129 IQLAW 133
> gap:GAPWK_1390 Phage replication protein
Length=717
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/199 (25%), Positives = 76/199 (38%), Gaps = 32/199 (16%)
Query 19 NKNNIDKYTIVNPATGETFPMFLIV---PCNKCALCNEKKAQQWSFRALCESYTSNKQAY 75
N+ ++K I N TGE P+ L V N E + F L + Q
Sbjct 285 NQKYLEKMAIENQETGEQLPLELQVYKSVANPAIRRVELMTRMRGFEDLADQL--GYQGA 342
Query 76 FITLT----YNNEHLPKN------GVFPEEIQLF----FKRLRTKLDRRGISHNLRYIA- 120
FITLT Y++ H G P E Q + + R+R KL+R N+++
Sbjct 343 FITLTAPAKYHSTHAKGGFVENWQGNTPRETQAYLCKVWSRIRAKLNR----ENIQFFGF 398
Query 121 -VSEYGHWSKRPHYHIILWNFPDNFESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFA 179
V+E H PH+HI+++ P++ + A+ S W E + F
Sbjct 399 RVAEPHH-DGTPHWHILIFMRPEDIQKAFY------SMWIYAMDEDGDEKGAAINRFEFK 451
Query 180 YCVPVINGGINYVMKYMGK 198
Y+ KY+ K
Sbjct 452 DIDKQKGSATGYIAKYIAK 470
> der:Dere_GG24836 GG24836 gene product from transcript GG24836-RA
Length=217
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (45%), Gaps = 24/121 (20%)
Query 36 TFPMFLIVPCNKCA--------LCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLP 87
T+P L++PCNK A + N K RALC+ S + F Y + LP
Sbjct 94 TYPDDLLLPCNKLAIIASIFGDIANNTKEILRQLRALCKLPGSAAETIF----YRSWKLP 149
Query 88 KNGVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHY--HIILWNFPDNFE 145
+ VF +E+ ++ L +R ++ N+ H ++R + LW FP++ +
Sbjct 150 QFVVFAKELSERYE--EEALVKREVAENI--------AHSTERSQLIAYTTLWEFPEHVD 199
Query 146 S 146
S
Sbjct 200 S 200
> ecz:ECS88_4652 hypothetical protein
Length=243
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query 100 FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL------WNFPDNFESAYSRLTL 153
++R + + ++R + LRY E+G R HYH+IL W P +F S TL
Sbjct 69 YQRHKRRANKRVRATTLRYFWCREFGKEKGRKHYHVILLLNKDTWCSPGDFTVPSSLATL 128
Query 154 IESCW 158
I+ W
Sbjct 129 IQLAW 133
> ecq:ECED1_3481 hypothetical protein
Length=243
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query 100 FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL------WNFPDNFESAYSRLTL 153
++R + + ++R + LRY E+G R HYH+IL W P +F S TL
Sbjct 69 YQRHKRRANKRVRATTLRYFWCREFGKEKGRKHYHVILLLNKDTWCSPGDFTVPSSLATL 128
Query 154 IESCW 158
I+ W
Sbjct 129 IQLAW 133
> ecv:APECO1_2309 hypothetical protein
Length=243
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query 100 FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL------WNFPDNFESAYSRLTL 153
++R + + ++R + LRY E+G R HYH+IL W P +F S TL
Sbjct 69 YQRHKRRANKRVRATTLRYFWCREFGKEKGRKHYHVILLLNKDTWCSPGDFTVPSSLATL 128
Query 154 IESCW 158
I+ W
Sbjct 129 IQLAW 133
> ecc:c4558 hypothetical protein
Length=243
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query 100 FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL------WNFPDNFESAYSRLTL 153
++R + + ++R + LRY E+G R HYH+IL W P +F S TL
Sbjct 69 YQRHKRRANKRVRATTLRYFWCREFGKEKGRKHYHVILLLNKDTWCSPGDFTVPSSLATL 128
Query 154 IESCW 158
I+ W
Sbjct 129 IQLAW 133
> senn:SN31241_6720 Intergenic-region protein
Length=243
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query 100 FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL------WNFPDNFESAYSRLTL 153
++R + + ++R + LRY E+G R HYH+IL W P +F S TL
Sbjct 69 YQRHKRRANKRVRATTLRYFWCREFGKEKGRKHYHVILLLNKDTWCSPGDFTVPSSLATL 128
Query 154 IESCW 158
I+ W
Sbjct 129 IKLAW 133
> eck:EC55989_4880 hypothetical protein
Length=243
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 20/95 (21%)
Query 84 EHLPKNGVFPEE----IQLFFKRLRTKL----------DRRGISHNLRYIAVSEYGHWSK 129
EH+P + P+ I FF+ L+ K+ ++R + L Y E+G
Sbjct 39 EHMPVTIMDPDPDSAVISRFFESLKAKIQAYQRKKRRTNKRVRATTLHYFWCREFGKEKG 98
Query 130 RPHYHIIL------WNFPDNFESAYSRLTLIESCW 158
R HYH+IL W P +F S TLI+ W
Sbjct 99 RKHYHVILLLNKDTWCSPGDFTVPSSLATLIQLAW 133
> vcj:VCD_002162 replication gene A protein
Length=861
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 41/198 (21%)
Query 25 KYTIVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCES---YTSNKQAYFITLTY 81
K ++ NPA L+V C C + Q F L + S K+ FI
Sbjct 333 KKSVSNPAIRR---HELMVRCRGCEDIGNELGLQGLFLTLTTPSKYHNSYKKGGFI---- 385
Query 82 NNEHLPKNGVFPEEIQLFFKR----LRTKLDRRGISHNLRYIAVS-EYGHWSKRPHYHII 136
+H NG P + Q + + +R KL+R +R+ V H PH+H++
Sbjct 386 --DHW--NGASPRDAQAYLNKKWQLIRAKLNR----DEIRWFGVRVAEPHHDGTPHWHLL 437
Query 137 LWNFPDNFESAYSRLTLIESCWRRPTGEYHPD-----GSPVTRSI-----------GFAY 180
+W ++ + R T I GE HP+ P + + F Y
Sbjct 438 IWVRKEDISAV--RDTFITYATEEDRGELHPEFEKEKQKPFRKGVYVGPLDYRPRCDFGY 495
Query 181 CVPVINGGINYVMKYMGK 198
P Y+ KY+ K
Sbjct 496 IDPTKGTATGYIAKYISK 513
> cmk:103184573 ADNP homeobox protein 2-like
Length=900
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (32%), Positives = 36/66 (55%), Gaps = 6/66 (9%)
Query 324 PSKTIINDTFIKYYLPQ-----FCSQTVYED-LYYKAFSYGLDCLSTALVFFDSSQVLKH 377
P K + + T+++ Q C + V+++ L ++GL CL AL F D +Q+ +H
Sbjct 652 PEKVVASATYLQRVRAQIGKCLLCKRYVHKNGLLSHLLTHGLSCLFCALTFHDLAQLAEH 711
Query 378 EKSLHM 383
KSLH+
Sbjct 712 VKSLHL 717
> bbf:BBB_0915 anaerobic C4-dicarboxylate transport protein
Length=125
Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 20/69 (29%), Positives = 37/69 (54%), Gaps = 2/69 (3%)
Query 135 IILWNFPDNFESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFAYCVPVINGGINYVMK 194
++LW F + + + ++ S R TGE HP+ +PV+ ++ A V V+ GI +++
Sbjct 7 LLLWVFAVVWMLSVCGICIVRS--RFGTGERHPEVNPVSWNVVLAQMVSVLFAGIPFMVY 64
Query 195 YMGKRECAP 203
M E +P
Sbjct 65 LMASEELSP 73
> bbi:BBIF_0935 hypothetical protein
Length=125
Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 20/69 (29%), Positives = 37/69 (54%), Gaps = 2/69 (3%)
Query 135 IILWNFPDNFESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFAYCVPVINGGINYVMK 194
++LW F + + + ++ S R TGE HP+ +PV+ ++ A V V+ GI +++
Sbjct 7 LLLWVFAVVWMLSVCGICIVRS--RFGTGERHPEVNPVSWNVVLAQMVSVLFAGIPFMVY 64
Query 195 YMGKRECAP 203
M E +P
Sbjct 65 LMASEELSP 73
> fpr:FP2_16510 hypothetical protein
Length=277
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/75 (31%), Positives = 38/75 (51%), Gaps = 9/75 (12%)
Query 71 NKQAYFITLTYNNEHLP---KNGVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEY--- 124
+K Y +T TY++EH P ++ K+L D++GI H ++I V EY
Sbjct 73 HKSDYSVTYTYDDEHRPDPADTKRVDKDFSAAMKKLYRMCDKKGIRHP-KWIVVHEYSTY 131
Query 125 --GHWSKRPHYHIIL 137
G W + H+H+I+
Sbjct 132 VDGVWVGKHHHHVIM 146
> amg:AMEC673_10165 prophage
Length=232
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query 100 FKR-LRTKLDRRGISH--NLRYIAVSEYGHWSKRPHYHIILW 138
FKR LR LD G+SH +L+Y+A EY + PHYH+ ++
Sbjct 84 FKRHLRASLDSLGLSHKHSLKYVAAREYDRFVNIPHYHVAIF 125
> sbg:SBG_2836 gpA; bacteriophage replication protein
Length=739
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (44%), Gaps = 10/114 (9%)
Query 89 NGVFPEEIQLF----FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNF 144
NG P + Q + + R+R KL R+ I + I V+E H PH+H++++ P++
Sbjct 342 NGASPSDTQSYLTGLWARIRAKLHRKEI--RIFGIRVAEPHH-DGTPHWHMLMFMLPEDV 398
Query 145 ESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFAYCVPVINGGINYVMKYMGK 198
E RL + + W E D + R A P YV KY+ K
Sbjct 399 ERV--RLIIRDYAWEEDRHELKSDKAKKARFHAEA-IDPEKGSATGYVAKYISK 449
> mhal:N220_06095 replication protein
Length=786
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (54%), Gaps = 20/89 (22%)
Query 73 QAYFITLTYNNEHL----------PK-NGVFPEEIQLF----FKRLRTKLDRRGI-SHNL 116
+ +FITLT +++ PK NG P E Q++ + ++R KL+R G+ ++
Sbjct 381 EGWFITLTAPSKYHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGF 440
Query 117 RYIAVSEYGHWSKRPHYHIILWNFPDNFE 145
R V+E H PH+H+IL+ P++ E
Sbjct 441 R---VAE-PHADATPHWHLILFTRPEDME 465
> mhao:J451_01365 replication protein
Length=786
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (54%), Gaps = 20/89 (22%)
Query 73 QAYFITLTYNNEHL----------PK-NGVFPEEIQLF----FKRLRTKLDRRGI-SHNL 116
+ +FITLT +++ PK NG P E Q++ + ++R KL+R G+ ++
Sbjct 381 EGWFITLTAPSKYHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGF 440
Query 117 RYIAVSEYGHWSKRPHYHIILWNFPDNFE 145
R V+E H PH+H+IL+ P++ E
Sbjct 441 R---VAE-PHADATPHWHLILFTRPEDME 465
> mhae:F382_02015 replication protein
Length=786
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (54%), Gaps = 20/89 (22%)
Query 73 QAYFITLTYNNEHL----------PK-NGVFPEEIQLF----FKRLRTKLDRRGI-SHNL 116
+ +FITLT +++ PK NG P E Q++ + ++R KL+R G+ ++
Sbjct 381 EGWFITLTAPSKYHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGF 440
Query 117 RYIAVSEYGHWSKRPHYHIILWNFPDNFE 145
R V+E H PH+H+IL+ P++ E
Sbjct 441 R---VAE-PHADATPHWHLILFTRPEDME 465
> mhx:MHH_c18950 repA; replication protein A (EC:3.1.-.-)
Length=786
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (54%), Gaps = 20/89 (22%)
Query 73 QAYFITLTYNNEHL----------PK-NGVFPEEIQLF----FKRLRTKLDRRGI-SHNL 116
+ +FITLT +++ PK NG P E Q++ + ++R KL+R G+ ++
Sbjct 381 EGWFITLTAPSKYHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGF 440
Query 117 RYIAVSEYGHWSKRPHYHIILWNFPDNFE 145
R V+E H PH+H+IL+ P++ E
Sbjct 441 R---VAE-PHADATPHWHLILFTRPEDME 465
> mhq:D650_12680 Replication protein A
Length=786
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (54%), Gaps = 20/89 (22%)
Query 73 QAYFITLTYNNEHL----------PK-NGVFPEEIQLF----FKRLRTKLDRRGI-SHNL 116
+ +FITLT +++ PK NG P E Q++ + ++R KL+R G+ ++
Sbjct 381 EGWFITLTAPSKYHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGF 440
Query 117 RYIAVSEYGHWSKRPHYHIILWNFPDNFE 145
R V+E H PH+H+IL+ P++ E
Sbjct 441 R---VAE-PHADATPHWHLILFTRPEDME 465
> vcr:VC395_A0202 rep
Length=853
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 41/198 (21%)
Query 25 KYTIVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCES---YTSNKQAYFITLTY 81
K ++ NPA L+V C C + Q F L + S K+ FI
Sbjct 325 KKSVSNPAIRR---HELMVRCRGCEDIGNELGLQGLFLTLTTPSKYHNSYKKGGFI---- 377
Query 82 NNEHLPKNGVFPEEIQLFFKR----LRTKLDRRGISHNLRYIAVS-EYGHWSKRPHYHII 136
+H NG P + Q + + +R KL+R +R+ V H PH+H++
Sbjct 378 --DHW--NGASPRDAQAYLNKKWQLIRAKLNR----DEIRWFGVRVAEPHHDGTPHWHLL 429
Query 137 LWNFPDNFESAYSRLTLIESCWRRPTGEYHPD-----GSPVTRSI-----------GFAY 180
+W ++ + R T I GE HP+ P + + F Y
Sbjct 430 IWVRKEDISAV--RDTFITYATEEDRGELHPEFEKEKQKPFRKVVYVGPLDYRPRCDFGY 487
Query 181 CVPVINGGINYVMKYMGK 198
P Y+ KY+ K
Sbjct 488 IDPTKGTATGYIAKYISK 505
> vco:VC0395_1066 hypothetical protein
Length=849
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 41/198 (21%)
Query 25 KYTIVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCES---YTSNKQAYFITLTY 81
K ++ NPA L+V C C + Q F L + S K+ FI
Sbjct 321 KKSVSNPAIRR---HELMVRCRGCEDIGNELGLQGLFLTLTTPSKYHNSYKKGGFI---- 373
Query 82 NNEHLPKNGVFPEEIQLFFKR----LRTKLDRRGISHNLRYIAVS-EYGHWSKRPHYHII 136
+H NG P + Q + + +R KL+R +R+ V H PH+H++
Sbjct 374 --DHW--NGASPRDAQAYLNKKWQLIRAKLNR----DEIRWFGVRVAEPHHDGTPHWHLL 425
Query 137 LWNFPDNFESAYSRLTLIESCWRRPTGEYHPD-----GSPVTRSI-----------GFAY 180
+W ++ + R T I GE HP+ P + + F Y
Sbjct 426 IWVRKEDISAV--RDTFITYATEEDRGELHPEFEKEKQKPFRKVVYVGPLDYRPRCDFGY 483
Query 181 CVPVINGGINYVMKYMGK 198
P Y+ KY+ K
Sbjct 484 IDPTKGTATGYIAKYISK 501
> ddc:Dd586_0405 hypothetical protein
Length=209
Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 35/69 (51%), Gaps = 8/69 (12%)
Query 115 NLRYIAVSEYGHWSKRPHYHIILWNFPDNFESAYSRL-------TLIESCWRRPTGEYHP 167
+LRYI E+ + +PHYH++L D ++S L T+I + W R G
Sbjct 90 DLRYIWCREFDWFGNKPHYHVVLLLNKDTYQSPGHYLSDDTNLATMIIAAWNRALGMKVA 149
Query 168 DGSPVTRSI 176
D +P+ RS+
Sbjct 150 D-TPLARSL 157
> cmk:103184537 ADNP homeobox protein 2-like
Length=1107
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (54%), Gaps = 6/65 (9%)
Query 324 PSKTIINDTFIKYYLPQ-----FCSQTVYED-LYYKAFSYGLDCLSTALVFFDSSQVLKH 377
P K + + ++++ Q FC V+++ L ++GL CL AL F D +Q+ +H
Sbjct 725 PDKVVASASYLQRVRAQIGKCLFCKSYVHKNVLLSHLLTHGLSCLFCALTFHDLAQLAEH 784
Query 378 EKSLH 382
KSLH
Sbjct 785 MKSLH 789
> kpm:KPHS_40100 gp36
Length=687
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (43%), Gaps = 10/114 (9%)
Query 89 NGVFPEEIQLF----FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNF 144
NG P + Q + + R+R KL R I + I V+E H PH+H++++ P++
Sbjct 292 NGASPSDTQSYLTGLWARIRAKLHREEI--RIFGIRVAEPHH-DGTPHWHMLMFMLPEDV 348
Query 145 ESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFAYCVPVINGGINYVMKYMGK 198
E RL + + W E D + R A P YV KY+ K
Sbjct 349 ERV--RLIIRDYAWEEDRHELRSDKAKKARFHAEA-IDPEKGSATGYVAKYISK 399
> kpn:KPN_04887 putative prophage protein
Length=606
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (43%), Gaps = 10/114 (9%)
Query 89 NGVFPEEIQLF----FKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNF 144
NG P + Q + + R+R KL R I + I V+E H PH+H++++ P++
Sbjct 207 NGASPSDTQSYLTGLWARIRAKLHREEI--RIFGIRVAEPHH-DGTPHWHMLMFMLPEDV 263
Query 145 ESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFAYCVPVINGGINYVMKYMGK 198
E RL + + W E D + R A P YV KY+ K
Sbjct 264 ERV--RLIIRDYAWEEDRHELRSDKAKKARFHAEA-IDPEKGSATGYVAKYISK 314
Lambda K H a alpha
0.322 0.136 0.426 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 871051171473