bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-5_CDS_annotation_glimmer3.pl_2_5

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  vvi:100267708  axial regulator YABBY 1-like                         39.3    1.2
  tol:TOL_1216  putative nucleotidyltransferase                       37.4    6.9
  ppp:PHYPADRAFT_171461  hypothetical protein                         37.7    8.8


> vvi:100267708  axial regulator YABBY 1-like
Length=211

 Score = 39.3 bits (90),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 33/120 (28%), Positives = 49/120 (41%), Gaps = 9/120 (8%)

Query  246  YCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGL---SNAQVHVGSKVSSSSEE  302
            +CN    +    +P        ++  G+ TN +PV+L+GL   S  Q+H+G    S S  
Sbjct  22   HCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNLRGLLLPSANQLHLGHAFFSPS--  79

Query  303  YNLLVTEGGSSDQLVVNFAGRSGFSFDVLA----LRRGEALQRWKEISLNVPQNYRAQIK  358
            +NLL      S   ++N    + FS         L R   + R  E    VP  Y   IK
Sbjct  80   HNLLEEIPNPSPNFLINQTTANDFSVSARGGADELPRPPVINRPPEKRQRVPSAYNRFIK  139


> tol:TOL_1216  putative nucleotidyltransferase
Length=258

 Score = 37.4 bits (85),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query  79   LHLLWRNAPEVISQMQSNVQHAGTQTTALTLGNYLPTISSSQLSAVCSRLSGKTNYFGYD  138
            L L W++ P  +  +QS + +             LP I S++      R   KTNY GY 
Sbjct  89   LKLFWKSNPAFVEWIQSPISYIDDGDFRHESLKLLPEIYSAEKGIYHYRSMAKTNYRGYL  148

Query  139  RSDLS--YKLMQYLRVGNSGQSSVNFGTSVPVS  169
            R D+    K    LR   S Q   ++GT+ P+ 
Sbjct  149  REDMVPLKKYFYVLRPLFSIQWLESYGTAAPIE  181


> ppp:PHYPADRAFT_171461  hypothetical protein
Length=901

 Score = 37.7 bits (86),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 22/90 (24%)

Query  427  MCIYHNVPLLD-YVSSAPDP------------------QFFVTQNTDLPIPELDSIGMQS  467
            + I H VPLLD  +S+A DP                  QFF+ Q+  LPI EL +I   +
Sbjct  811  LAITH-VPLLDNTLSAACDPFVYADALSTWDVMIAWFFQFFLRQH--LPIAELFAISSDT  867

Query  468  VPVSMYSNSDKELVTGFSSADFTMGYLPRY  497
              V++ +++ +   +G  SA+F +G +P Y
Sbjct  868  KTVNLITSATEWRASGIVSAEFELGRMPAY  897



Lambda      K        H        a         alpha
   0.318    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1354074645985