bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-29_CDS_annotation_glimmer3.pl_2_4

Length=46
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  dol:Dole_1777  two component sigma-54 specific Fis family trans...  31.6    6.4


> dol:Dole_1777  two component sigma-54 specific Fis family transcriptional 
regulator
Length=465

 Score = 31.6 bits (70),  Expect = 6.4, Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 26/42 (62%), Gaps = 1/42 (2%)

Query  1    MASLGRIHTFGPYRTMRKAHE-VFDIVTKVAPSDATVNIICE  41
            +A+LGR +TFG      KA + V D++TKVA  D TV +  E
Sbjct  140  IATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGE  181



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125766237038