bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-29_CDS_annotation_glimmer3.pl_2_1

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101314332  capsid protein VP1-like                              68.2    8e-11
  rpf:Rpic12D_0063  hypothetical protein                              38.9    0.79
  aoe:Clos_2602  S-layer domain-containing protein                    38.1    1.1
  hdn:Hden_1292  3-oxoacyl-(acyl-carrier-protein) synthase III (E...  36.6    2.8
  oaa:100076638  DDX20; DEAD (Asp-Glu-Ala-Asp) box polypeptide 20     35.8
  adl:AURDEDRAFT_119772  hypothetical protein                         35.4    8.7


> fve:101314332  capsid protein VP1-like
Length=421

 Score = 68.2 bits (165),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query  1    VTSPDARLQRPEYLGGNRIPIVISEI--NQTSGTSANSTPQGNPSGQSRTTDVHSDFKKS  58
            V SPDARLQRPEYLGG   PI I+ I     +G    +TPQGN +           F +S
Sbjct  341  VASPDARLQRPEYLGGGSTPINIAPIAQTGGTGAQGTTTPQGNLAAFGTYMAKGHGFSQS  400

Query  59   FVEHGFIIGVMVARYDHTYQQ  79
            FVEHG +IG++  R D TYQQ
Sbjct  401  FVEHGHVIGLVSVRADLTYQQ  421


> rpf:Rpic12D_0063  hypothetical protein
Length=862

 Score = 38.9 bits (89),  Expect = 0.79, Method: Compositional matrix adjust.
 Identities = 23/63 (37%), Positives = 35/63 (56%), Gaps = 1/63 (2%)

Query  62   HGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDDE  121
            H F+  VM A  D  + +  +R W+RKGRL  +      IG  AV ++E +A+GN T   
Sbjct  717  HPFVARVMRAMPDADWAERGQR-WARKGRLVGFLGALVGIGWDAVHSREEFAKGNQTLGY  775

Query  122  VFG  124
            ++G
Sbjct  776  LYG  778


> aoe:Clos_2602  S-layer domain-containing protein
Length=493

 Score = 38.1 bits (87),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (3%)

Query  4    PDARLQRPEYLGG--NRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFVE  61
            PD  + R E+         I ++E+ +T G+S N TP+ +P     TTD + D+ K+ V 
Sbjct  319  PDVPMNREEFTRAVMRASAIRLAEVPKTRGSSRNKTPEISPFSDVATTDANYDYIKNGVA  378

Query  62   HGFIIGV  68
             G I GV
Sbjct  379  KGIIQGV  385


> hdn:Hden_1292  3-oxoacyl-(acyl-carrier-protein) synthase III 
(EC:2.3.1.41)
Length=326

 Score = 36.6 bits (83),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 17/37 (46%), Positives = 24/37 (65%), Gaps = 0/37 (0%)

Query  158  DDYSKLPSLSDSWVQEDSAVVNRVIAVSEENSNQLWA  194
            +D SK+   SD+W+QE S +VNR IA   E ++ L A
Sbjct  24   EDLSKIVDTSDAWIQERSGIVNRHIADETEKTSDLGA  60


> oaa:100076638  DDX20; DEAD (Asp-Glu-Ala-Asp) box polypeptide 
20
Length=745

 Score = 35.8 bits (81),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query  28   QTSGTSANSTPQGNPSGQSRTTDVH--SDFKKSFVEHGFIIGVMVARYDHTYQQGLER  83
            QTSG S +S PQG  + QS    +   S FK       +    +V  Y+H  ++GLE+
Sbjct  467  QTSGQSGSSKPQGKEASQSPLPKIPCLSSFKAQLPSKTWTFAELVEDYEHFIKEGLEK  524


> adl:AURDEDRAFT_119772  hypothetical protein
Length=541

 Score = 35.4 bits (80),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (45%), Gaps = 21/132 (16%)

Query  20   PIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSF--VEHGFIIGVMVARYDHTY  77
            P ++SE + T+ + + S+P+     +  +  +   F  SF  +EHG         ++H  
Sbjct  281  PTLVSERDATAASDSGSSPESPGKSRKPSVSLSQPFPDSFCTIEHG---------HNHPD  331

Query  78   QQGLERFWSR-KGRLDYYW------PVFANIGEQAVLNKEIYAQGNGTDDEVFGYQEAWA  130
            Q   ER  S+  GR D         P+++ +  +A  NKE    G G      G+ +AW+
Sbjct  332  QVRAERNDSQLNGRTDSQQSFASQDPLWSGVDGRAGTNKERIQNGGGRKGVDVGWLQAWS  391

Query  131  DY---RYKPNRV  139
                 R++P R+
Sbjct  392  QQYGGRHEPERL  403



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269954996052