bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-26_CDS_annotation_glimmer3.pl_2_4
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
syj:D082_09110 Transcriptional regulator PchR 40.0 0.31
fcf:FNFX1_1320 hypothetical protein 36.6 4.3
ftn:FTN_1277 outer membrane efflux protein 36.6 4.3
fto:X557_03685 transporter 36.6 5.0
fcn:FN3523_1347 Outer membrane component of tripartite multidr... 36.6 5.1
ftm:FTM_1108 outer membrane efflux protein 36.6 5.2
ftg:FTU_1288 Outer membrane component of tripartite multidrug ... 36.6 5.2
ftt:FTV_1204 Outer membrane component of tripartite multidrug ... 36.6 5.2
ftr:NE061598_07265 outer membrane efflux protein 36.6 5.2
ftw:FTW_0686 outer membrane efflux protein 36.6 5.2
ftf:FTF1258 outer membrane efflux protein 36.6 5.2
ftu:FTT_1258 outer membrane efflux protein 36.6 5.2
fti:FTS_0687 outer membrane efflux protein 36.2 5.6
fts:F92_03760 outer membrane efflux protein 36.2 5.6
fta:FTA_0725 outer membrane efflux protein 36.2 5.6
fth:FTH_0688 outer membrane efflux protein 36.2 5.6
ftl:FTL_0686 outer membrane efflux protein 36.2 5.6
> syj:D082_09110 Transcriptional regulator PchR
Length=329
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (10%)
Query 65 LITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWIFFGYEVSEKTINY--IVKYVTKR 122
L T +GH +T+R L IW +L +++F + W E + + ++
Sbjct 40 LPTYLGHGHTRRFELSSGIWLDLIDKEFTQPWA-----LKMPAHEHLVQFTILLSGAVDY 94
Query 123 DEANPEFNGKI--FTSKGIGIGYINKNSLNKH 152
DE P K+ F+ GI GY+ + +H
Sbjct 95 DETYPTLGAKMGYFSGSGISPGYVARYGRLRH 126
> fcf:FNFX1_1320 hypothetical protein
Length=490
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKVKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftn:FTN_1277 outer membrane efflux protein
Length=490
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKVKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> fto:X557_03685 transporter
Length=490
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> fcn:FN3523_1347 Outer membrane component of tripartite multidrug
resistance system
Length=490
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLLTSSCSFFSPEY-ERPKVKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftm:FTM_1108 outer membrane efflux protein
Length=490
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftg:FTU_1288 Outer membrane component of tripartite multidrug
resistance system
Length=490
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftt:FTV_1204 Outer membrane component of tripartite multidrug
resistance system
Length=490
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftr:NE061598_07265 outer membrane efflux protein
Length=490
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftw:FTW_0686 outer membrane efflux protein
Length=490
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftf:FTF1258 outer membrane efflux protein
Length=490
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftu:FTT_1258 outer membrane efflux protein
Length=490
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFSPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> fti:FTS_0687 outer membrane efflux protein
Length=490
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFNPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> fts:F92_03760 outer membrane efflux protein
Length=490
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFNPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> fta:FTA_0725 outer membrane efflux protein
Length=490
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFNPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> fth:FTH_0688 outer membrane efflux protein
Length=490
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFNPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
> ftl:FTL_0686 outer membrane efflux protein
Length=490
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (42%), Gaps = 16/106 (15%)
Query 8 RNKILSKNIIFATLTFSEESLKKLEYDEKEPNKAPQ------------KAISLFRKRWWK 55
RNKIL +I ATL S S EY E+ KAP K L + WW+
Sbjct 3 RNKILPLALISATLITSSCSFFNPEY-ERPKIKAPALWNNQDKNIEVTKNWDLTKVAWWR 61
Query 56 KYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWI 101
++ P+ + LIT DN K L I L + YGW+
Sbjct 62 EFNDPVLNNLITTALKDNNK---LQVSIGNILQANAEINKANYGWL 104
Lambda K H a alpha
0.315 0.132 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 379047013737