bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-22_CDS_annotation_glimmer3.pl_2_1

Length=77
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  afs:AFR_01855  type II secretion system protein                     34.3    1.2
  stp:Strop_4037  type II secretion system protein                    33.5    2.6
  tca:656781  glucose dehydrogenase [FAD, quinone]-like               33.1    4.3
  vma:VAB18032_06295  type II secretion system F domain-containin...  32.3    6.1
  arr:ARUE_c08280  rbsC1; ribose transport system permease RbsC       32.0    9.4
  aau:AAur_0875  rbsC; ribose ABC transporter permease                32.0    9.5


> afs:AFR_01855  type II secretion system protein
Length=215

 Score = 34.3 bits (77),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (59%), Gaps = 1/41 (2%)

Query  5    TSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV  45
            T A+   +GV++ VLP   CF   F+L+  +PVV   + DV
Sbjct  175  TDAAAQRAGVLI-VLPLGLCFLPAFVLAGLVPVVVAVLGDV  214


> stp:Strop_4037  type II secretion system protein
Length=253

 Score = 33.5 bits (75),  Expect = 2.6, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query  4    ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV  45
            A  A+   SGV++ VLP   CF   FIL+  +PV+   + DV
Sbjct  212  AAEATAQRSGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV  252


> tca:656781  glucose dehydrogenase [FAD, quinone]-like
Length=604

 Score = 33.1 bits (74),  Expect = 4.3, Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query  9    PSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFM---VDVGF  47
            P   G+     PYW C+  +F LSS+ PV T  +   +D GF
Sbjct  500  PGCEGLEFDTRPYWVCYVRHFTLSSYHPVGTCALGRVIDEGF  541


> vma:VAB18032_06295  type II secretion system F domain-containing 
protein
Length=252

 Score = 32.3 bits (72),  Expect = 6.1, Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (59%), Gaps = 1/39 (3%)

Query  7    ASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV  45
            A+   SGV++ VLP   CF   FIL+  +PV+   + DV
Sbjct  214  AAARRSGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV  251


> arr:ARUE_c08280  rbsC1; ribose transport system permease RbsC
Length=344

 Score = 32.0 bits (71),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)

Query  19   LPYWFCFTINFILSSFIPVVTIFMVDVGFIDPWLSTMSS  57
            LP+W       +L +FI +V   +V  G + P+++T+++
Sbjct  116  LPFWLAMVCGLLLGAFIGLVNGLLVTFGHVQPFIATLAT  154


> aau:AAur_0875  rbsC; ribose ABC transporter permease
Length=317

 Score = 32.0 bits (71),  Expect = 9.5, Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)

Query  19   LPYWFCFTINFILSSFIPVVTIFMVDVGFIDPWLSTMSS  57
            LP+W       +L +FI +V   +V  G + P+++T+++
Sbjct  89   LPFWLAMVCGLLLGAFIGLVNGLLVTFGHVQPFIATLAT  127



Lambda      K        H        a         alpha
   0.330    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128714468347