bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-21_CDS_annotation_glimmer3.pl_2_6

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ctp:CTRG_01941  hypothetical protein                                34.3    3.2
  arp:NIES39_D03930  ribH; riboflavin synthase beta chain             33.5    4.2


> ctp:CTRG_01941  hypothetical protein
Length=1012

 Score = 34.3 bits (77),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 18/48 (38%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query  52   ILPAYNVRTDRWDIAENAMDKINAAKMAKRDGNFGENVPDKIEGGTPS  99
            I PA+  R D  DI  NAM +  +A+   R G     +P K  GG P+
Sbjct  499  IDPAFKARLDSLDIHANAMKRAGSARDPSRGG-----LPGKFPGGVPA  541


> arp:NIES39_D03930  ribH; riboflavin synthase beta chain
Length=201

 Score = 33.5 bits (75),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query  28   ARIVQEKTPITDGAPIIYTDREQGILPAYNVRTDR-WDIAENAMDKINAAKMAKRDGNFG  86
            A   Q   P+  G  I+ TD  Q  L    +++++ WD A NAM+ ++  +  +  G  G
Sbjct  107  ASAFQTGVPVIFG--ILTTDSMQQALERAGIKSNKGWDYAMNAMEMVSLMRQMRHQGRSG  164

Query  87   ENVPDKI  93
              +P+ I
Sbjct  165  PYLPNTI  171



Lambda      K        H        a         alpha
   0.310    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127879331103