bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-18_CDS_annotation_glimmer3.pl_2_1 Length=131 Score E Sequences producing significant alignments: (Bits) Value fte:Fluta_0476 hypothetical protein 35.4 2.1 > fte:Fluta_0476 hypothetical protein Length=461 Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/101 (25%), Positives = 46/101 (46%), Gaps = 11/101 (11%) Query 28 KDEKGNKKLIETEPIDIQAEIESYADECDIK-----NIVRKASFDPEFAKSLVDSAKTDE 82 +++KG + L E + + +E + IK +++ K E S++ KTD Sbjct 233 RNQKGGQVLREHFALSMMSESSQVKNNVAIKQLDYDSVILKGILMNETPSSIIPVVKTDY 292 Query 83 ILD-----ITEWPTDIHEYHAMIATAQANAMKLQQMQEDIA 118 ++D ITEW ++H HA+I+ + L + D A Sbjct 293 VIDIVNKQITEWE-NVHNLHAIISGGGRDTFGLDYLATDYA 332 Lambda K H a alpha 0.309 0.126 0.353 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 127182003372