bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-15_CDS_annotation_glimmer3.pl_2_2

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  mfa:Mfla_1406  TM helix protein                                     32.0    8.7


> mfa:Mfla_1406  TM helix protein
Length=223

 Score = 32.0 bits (71),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query  9    IERFNQKNDFDFTVSRVIVTRVAYVRVIKLIPITRFSLFGITVTEAMKIARSFNTLADHV  68
            +E F +  DFD T+S VI ++V Y  VI L  IT  +  G+      ++A   N LA+++
Sbjct  65   LEAFLKHGDFDLTLSGVI-SQVIYWLVILLFVITGANTLGLN-----EVAHMLNNLANYL  118



Lambda      K        H        a         alpha
   0.330    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129127441832