bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-13_CDS_annotation_glimmer3.pl_2_5 Length=65 Score E Sequences producing significant alignments: (Bits) Value enc:ECL_01809 hypothetical protein 32.7 4.2 > enc:ECL_01809 hypothetical protein Length=615 Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 22/32 (69%), Gaps = 0/32 (0%) Query 34 SLSISKNNSNSPQQTEQSSVSSVDSTSINLKR 65 SLSIS N SN+ +TE+ SVSS S +N KR Sbjct 359 SLSISTNGSNAAGETEKPSVSSPASKPVNKKR 390 Lambda K H a alpha 0.312 0.123 0.324 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 128662101624