bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-12_CDS_annotation_glimmer3.pl_2_6 Length=50 Score E Sequences producing significant alignments: (Bits) Value pin:Ping_1837 FAD-dependent pyridine nucleotide-disulfide oxid... 31.2 9.2 > pin:Ping_1837 FAD-dependent pyridine nucleotide-disulfide oxidoreductase Length=369 Score = 31.2 bits (69), Expect = 9.2, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 18/22 (82%), Gaps = 0/22 (0%) Query 21 VISLDRLDSFLSRGYTVEFVQP 42 +I+L +LD+F+S+GY V +QP Sbjct 14 MITLSKLDTFISKGYQVTVIQP 35 Lambda K H a alpha 0.323 0.140 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 129449922336