bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-6_CDS_annotation_glimmer3.pl_2_4 Length=423 Score E Sequences producing significant alignments: (Bits) Value 406984.CPK_ORF00729 80.9 2e-15 > 406984.CPK_ORF00729 Length=121 Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 64/102 (63%), Gaps = 6/102 (6%) Query 40 FLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 98 ++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77 Query 99 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNF 140 F KRLR ++ H +RY EYG +RPHYH++++N+ Sbjct 78 FLKRLRDRIS----PHKIRYFGCGEYGTKLQRPHYHLLIFNY 115 Lambda K H a alpha 0.322 0.136 0.426 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 843076440430