bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-41_CDS_annotation_glimmer3.pl_2_1 Length=195 Score E Sequences producing significant alignments: (Bits) Value 70448.Q00UT9 37.4 1.4 > 70448.Q00UT9 Length=304 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 0/76 (0%) Query 96 LTSFHKGVFTQSYWVQRANQRLKNFLPLETSKHLQQIMLLTKKVSDALFPCQMRITLNCP 155 L+ G +Q + Q L E +K +++ +L + +SD PC + T + Sbjct 168 LSRLQDGGESQDFSQDEITQAFVELLGSEKNKEVRKAILGSLAISDCTVPCVIERTRDVA 227 Query 156 LDLQALPFLMLTQLLP 171 D++ + FL LT +P Sbjct 228 EDVRRIAFLALTSKVP 243 Lambda K H a alpha 0.328 0.136 0.415 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 198388721790