bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-34_CDS_annotation_glimmer3.pl_2_3 Length=92 Score E Sequences producing significant alignments: (Bits) Value 292415.Tbd_0018 34.7 2.0 > 292415.Tbd_0018 Length=710 Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/47 (43%), Positives = 30/47 (64%), Gaps = 1/47 (2%) Query 39 EDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRL-ALRVSALM 84 +DAD L+R ++V QVA + + VD F +PR RL AL ++AL+ Sbjct 522 QDADFLARATQTIVNQVAAMKNMVDAFAGYARMPRARLEALDLNALV 568 Lambda K H a alpha 0.318 0.132 0.354 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 125709432900