bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-33_CDS_annotation_glimmer3.pl_2_4 Length=65 Score E Sequences producing significant alignments: (Bits) Value 469590.BSCG_01606 58.2 5e-10 > 469590.BSCG_01606 Length=69 Score = 58.2 bits (139), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/65 (51%), Positives = 46/65 (71%), Gaps = 2/65 (3%) Query 1 MKISANQWIEIVKLISTFVIGIITTLFVQSC--TLSLSVSKNNSNSTQQTEQSSVSSIDS 58 MK++++QW I++ I T V+ I + V SC T+S+SV KNNS+STQQ EQ S S DS Sbjct 1 MKLTSDQWNRIIQAIVTAVVTICNIILVSSCAVTMSMSVQKNNSSSTQQIEQKSESRNDS 60 Query 59 TSIDL 63 T++DL Sbjct 61 TTLDL 65 Lambda K H a alpha 0.311 0.121 0.309 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 127741675040