bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-33_CDS_annotation_glimmer3.pl_2_3 Length=113 Score E Sequences producing significant alignments: (Bits) Value 39947.LOC_Os02g21340.1 37.0 0.50 > 39947.LOC_Os02g21340.1 Length=1123 Score = 37.0 bits (84), Expect = 0.50, Method: Composition-based stats. Identities = 21/57 (37%), Positives = 28/57 (49%), Gaps = 6/57 (11%) Query 47 KNQLSLQELVFSELGYSDELF-----DSFYIKPCIKKLKNSYTDKWKDTNYREVHYF 98 KNQ ++EL GY D LF SFYI+ C+ L Y WK+ +Y + Y Sbjct 817 KNQELIEELSIPPPGYRDLLFATKYSQSFYIQ-CVANLWKQYKSYWKNPSYNSLRYL 872 Lambda K H a alpha 0.323 0.140 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 125045739520