bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-32_CDS_annotation_glimmer3.pl_2_1 Length=193 Score E Sequences producing significant alignments: (Bits) Value 547048.YPC_3412 35.0 6.0 > 547048.YPC_3412 Length=218 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 25/93 (27%), Positives = 45/93 (48%), Gaps = 13/93 (14%) Query 6 HTLWESTDPSLSAHISISYFSLTPTNSPRILSELLIHVGNLDVSIALRPEERLSRTLRDI 65 + +WE ++ + + I Y + P N RIL ELLI++ + E+R R L + Sbjct 60 NEVWELSESKID-QLEIEYQAKYPDNPLRILRELLIYI------LVSTREDRRRRALME- 111 Query 66 LIVLHLFPYISKKIAAFVLLHDSLTALDFSSFH 98 IV H ++ + + +HD+ LD +S+ Sbjct 112 -IVFHKCEFVGEMTS----VHDARKVLDLASYE 139 Lambda K H a alpha 0.321 0.133 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 192090667130