bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-31_CDS_annotation_glimmer3.pl_2_5 Length=217 Score E Sequences producing significant alignments: (Bits) Value 585502.HMPREF0645_0935 66.2 4e-10 > 585502.HMPREF0645_0935 Length=519 Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 12/195 (6%) Query 2 FNVISPDARLQRPEYLGGTHSRVNVVPTAQTSSTDSVSPQSNLSAFGVLGDSAHGFNKSF 61 + V PD+R R YLGG S + V QTS T + + G + G + Sbjct 295 YGVEIPDSRDGRVNYLGGFDSDLQVSDVTQTSGTTATEYKPEAGYLGRIAGKGTGSGRGR 354 Query 62 V-----EHGYVIGLCCLRADITYQ-QGLNRMWSRRQLFDFYWPTLAHLGEQVVYNKEIYA 115 + EHG ++ + L I Y L+ M + FDF+ P +LG Q + + I + Sbjct 355 IVFDAKEHGVLMCIYSLVPQIQYDCTRLDPMVDKLDRFDFFTPEFENLGMQPLNSSYISS 414 Query 116 QGTAD-DNGVFGYQERYAEYRYKPSMITGKLRSTDAQSLDVWHLA--QRFDSLPKLN-QD 171 T D N V GYQ RY+EY+ + G+ DA L W ++ +R+ + P+L D Sbjct 415 FCTPDPKNPVLGYQPRYSEYKTALDINHGQFAQNDA--LSSWSVSRFRRWTTFPQLEIAD 472 Query 172 FIEENPPINRVIAVQ 186 F + +N V V+ Sbjct 473 FKIDPGCLNSVFPVE 487 Lambda K H a alpha 0.321 0.137 0.426 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 258899930410