bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-31_CDS_annotation_glimmer3.pl_2_3 Length=315 Score E Sequences producing significant alignments: (Bits) Value 406984.CPK_ORF00729 91.7 7e-20 > 406984.CPK_ORF00729 Length=121 Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/97 (46%), Positives = 61/97 (63%), Gaps = 2/97 (2%) Query 40 IPCGQCIGCRLDRSLDSAVRAHHESLLYDRNYFLTLTYSPEHLPPFGSLIPRDLTLFWKR 99 +PC +C CR + + R HE+ LY++N FLTLTY +HLP +GSL+ L LF KR Sbjct 22 MPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQYGSLVKLHLQLFLKR 81 Query 100 LRKRGV--SLRYMACGEYGSAFGRPHYHAILFNLPAI 134 LR R +RY CGEYG+ RPHYH ++FN ++ Sbjct 82 LRDRISPHKIRYFGCGEYGTKLQRPHYHLLIFNYDSL 118 Lambda K H a alpha 0.325 0.141 0.451 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 535902157120