bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-28_CDS_annotation_glimmer3.pl_2_2 Length=235 Score E Sequences producing significant alignments: (Bits) Value 4533.OB0262G10010.1 38.1 1.3 > 4533.OB0262G10010.1 Length=855 Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/83 (29%), Positives = 45/83 (54%), Gaps = 6/83 (7%) Query 92 ILASSIEPNTIIRERLPKTLHEQLQITLPKG---KRRDHFTSLRITITAAGDMIIVIRQG 148 +L SS+ ++ RE+L + +QL+I LP G + + S R+ AG+ ++ I Sbjct 515 VLDSSVSISSETREQL---VRKQLEIFLPHGDGVEATGEYDSKRMLTATAGETLVSILSK 571 Query 149 CKPGAIMILQLQKTTVGPFAGIL 171 CKP ++ IL+ + + +G+L Sbjct 572 CKPISLFILRERNDIIDHLSGML 594 Lambda K H a alpha 0.323 0.138 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 310440074000