bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-1_CDS_annotation_glimmer3.pl_2_5 Length=113 Score E Sequences producing significant alignments: (Bits) Value 7668.SPU_005807tr 33.9 3.7 > 7668.SPU_005807tr Length=154 Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query 23 IDIQQEIESYADECDIKSIIRKASFDPQFLKSLSEGAMTGAEVDITEWPQNIHEYHRMIA 82 I ++ ++ESYA +IKS I AS + + L S + +T A D+ W N +A Sbjct 51 IAVRNQLESYA--FNIKSAINDASVESK-LSSSDKEVVTKAVDDVITWMDN-----NSLA 102 Query 83 TAQANAMKLEELQKTAT 99 + + KLEELQKT + Sbjct 103 NKEEFSFKLEELQKTCS 119 Lambda K H a alpha 0.307 0.123 0.338 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 125045739520