bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-1_CDS_annotation_glimmer3.pl_2_3 Length=87 Score E Sequences producing significant alignments: (Bits) Value 521003.COLINT_02688 35.0 0.73 > 521003.COLINT_02688 Length=156 Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust. Identities = 17/33 (52%), Positives = 23/33 (70%), Gaps = 2/33 (6%) Query 43 YRMLRKVSNIEDAKMLVDEIWQMKS--FANTIE 73 YRM+ V +IEDAK+L+D Q+KS NT+E Sbjct 76 YRMIICVRSIEDAKLLIDGCPQIKSLNLGNTLE 108 Lambda K H a alpha 0.313 0.125 0.345 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 127940762400