bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-12_CDS_annotation_glimmer3.pl_2_5

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  395495.Lcho_4060                                                    99.4    3e-23


> 395495.Lcho_4060
Length=236

 Score = 99.4 bits (246),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 54/121 (45%), Positives = 72/121 (60%), Gaps = 6/121 (5%)

Query  5    KYFSFTEMILTASTAQE--NNLPDWDDINRLLELCRWILDPVREMYGKPIVVTSGFRTPF  62
            ++F+  E+  + +   E  +N P   +I  L  LC  +LDP+RE  GKPI VTSG+R P 
Sbjct  5    RFFTLAELTHSNTAKAEGIDNQPTTTEIEALRALCTAVLDPLREAIGKPIKVTSGYRGPV  64

Query  63   LNRLVGGVSTSQHMQGLAADLRCDDPK--ALFDLIAESDLPFDQLIYY--QKKKFVHVSY  118
            LNR V G + SQH++G AADL+       ALF  +    LPFDQLIY      K+VHVS+
Sbjct  65   LNRRVKGAAKSQHLRGEAADLQSPGTAVLALFKRVIRLGLPFDQLIYEVNGASKWVHVSH  124

Query  119  S  119
            S
Sbjct  125  S  125



Lambda      K        H        a         alpha
   0.323    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124768809920