bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-12_CDS_annotation_glimmer3.pl_2_3

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02721                                                   357   9e-112


> 483216.BACEGG_02721
Length=578

 Score =   357 bits (916),  Expect = 9e-112, Method: Compositional matrix adjust.
 Identities = 240/640 (38%), Positives = 324/640 (51%), Gaps = 90/640 (14%)

Query  1    MAGLFSYGDIKNKPRRSGFDLGNKNAFTAKVGELLPVYWKFCLPGDKFKISQEWFTRTQP  60
            MA + S   I+NKP R+GFDL  K  FTAK GELLPV  K  LPGD FKI+ + FTRTQP
Sbjct  1    MANIMSLKSIRNKPSRNGFDLSFKKNFTAKAGELLPVMVKEVLPGDTFKINLKAFTRTQP  60

Query  61   VDTSAFTRIREYYEWFFVPLHLMYRNSNEAIMSMENQPNYAAS--GTQSITFNRKLPWVD  118
            V+T+AF RIREYY++FFVP  L++  +N  +  M + P +A S   T++   + ++P++ 
Sbjct  61   VNTAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDNPQHAVSIDPTRNFVLSGEMPYMT  120

Query  119  ---LLTLNNAVENVKA-STYHDNMFGFSRALGFAKLYNYLGVGQVDPSKT--------LA  166
               + +  NA+    A + Y  N FG++R+    KL  YLG G  +   T        +A
Sbjct  121  SEAIASYINALSTASALADYKSNYFGYNRSKSSVKLLEYLGYGNYESFLTDDWNTAPLMA  180

Query  167  NLRISAFPFYAYQKIYNDYYRNSQWEVNKPWTYNCDFWNGEDTTPVASSKDLFDTNPNDS  226
            NL  + F   AYQKIY+D+YR+SQWE   P T+N D+ +G       +    F  N N  
Sbjct  181  NLNHNIFGLLAYQKIYSDFYRDSQWERVSPSTFNVDYLDGSSMNLDNAYSTEFYQNYN--  238

Query  227  IFELRYANWNKDLYMGAMPNAQFGDVAFVPV--DSSGKLPVSLPSIEVGGVAPIYNTGAG  284
             F+LRY NW KDL+ G +P+ Q+G+ A   +  D +GKL +S             N    
Sbjct  239  FFDLRYCNWQKDLFHGVLPHQQYGETAVASITPDVTGKLTLS-------------NFSTV  285

Query  285  GVQPDAQIGLRGAITGAPDNGQTVTAYGADKTDAARPYFYAVPDGSVAHLKTNAKTIQVP  344
            G  P                    TA G    +   P F  V D S              
Sbjct  286  GTSP-------------------TTASGTATKNL--PAFDTVGDLS--------------  310

Query  345  YEFSSKFDVLQLRAAECLQKWKEIAQANGQNYASQVKAHFGVSPNPMTSHRCQRVCGFDG  404
                    +L LR AE LQKWKEI Q+  ++Y  Q++ H+GVS     S  C  + G   
Sbjct  311  --------ILVLRQAEFLQKWKEITQSGNKDYKDQLEKHWGVSVGDGFSELCTYLGGVSS  362

Query  405  SIDISAVENTNLS-SDEAIIRGKGIGGYRVNKPETFKTT-EHGVLMCIYHAVPLLDYAPT  462
            SIDI+ V NTN++ S  A I GKG+G    N    F +   +G++MCIYH +PLLDY   
Sbjct  363  SIDINEVINTNITGSAAADIAGKGVG--VANGEINFNSNGRYGLIMCIYHCLPLLDYTTD  420

Query  463  GPDLQFMTTVDGDSWPVPELDSVGFEELPSYSLLNTSDVQPIKEPRPFGYVPRYISWKTS  522
              D  F+  V+   + +PE D VG + +P   L+N             GYVPRYI +KTS
Sbjct  421  MLDPAFL-KVNSTDYAIPEFDRVGMQSMPLVQLMNPLRSFANASGLVLGYVPRYIDYKTS  479

Query  523  VDVVRGAFIDTLKSWTAPIGEDYM--KIYFDNNN--------VPGGAHFGFYTWFKVNPS  572
            VD   G F  TL SW    G   +  ++   N+         VP  A   F T+FKVNP 
Sbjct  480  VDQSVGGFKRTLNSWVISYGNISVLKQVTLPNDAPPIEPSEPVPSVAPMNF-TFFKVNPD  538

Query  573  VVNPIFGVVADGSWNTDQLLVNCDFDVRVARNLSYDGLPY  612
             ++PIF V A    NTDQ L +  FD++  RNL  DGLPY
Sbjct  539  CLDPIFAVQAGDDTNTDQFLCSSFFDIKAVRNLDTDGLPY  578



Lambda      K        H        a         alpha
   0.318    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1370398778060