bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-11_CDS_annotation_glimmer3.pl_2_6 Length=79 Score E Sequences producing significant alignments: (Bits) Value 4081.Solyc03g116270.2.1 34.3 1.5 > 4081.Solyc03g116270.2.1 Length=308 Score = 34.3 bits (77), Expect = 1.5, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (48%), Gaps = 1/67 (1%) Query 12 PLPESEE-FIITIGNHLATAEKFKSRKAAEMRINKTDWNLVSALFFALKEADKWAEKNPE 70 P+P S++ ++ IG+ + K + A + + N S +FF E DKW E P+ Sbjct 202 PIPPSKDKLVVNIGDVIQVLSNNKFKSATHKVVRPIETNRYSYVFFYNVEGDKWIEPLPQ 261 Query 71 LVKQNKE 77 K+ E Sbjct 262 FTKEIGE 268 Lambda K H a alpha 0.313 0.128 0.359 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126695802910