bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-5_CDS_annotation_glimmer3.pl_2_5
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094354|emb|CDL65742.1| unnamed protein product 409 3e-131
gi|490418709|ref|WP_004291032.1| hypothetical protein 403 3e-129
gi|547226430|ref|WP_021963493.1| putative uncharacterized protein 402 5e-129
gi|496050829|ref|WP_008775336.1| hypothetical protein 399 7e-128
gi|494822885|ref|WP_007558293.1| hypothetical protein 367 7e-115
gi|575094321|emb|CDL65708.1| unnamed protein product 245 1e-68
gi|496521299|ref|WP_009229582.1| capsid protein 202 1e-53
gi|494308783|ref|WP_007173938.1| hypothetical protein 191 1e-49
gi|517172762|ref|WP_018361580.1| hypothetical protein 183 7e-47
gi|490477384|ref|WP_004347761.1| capsid protein 167 2e-41
>gi|575094354|emb|CDL65742.1| unnamed protein product [uncultured bacterium]
Length=615
Score = 409 bits (1051), Expect = 3e-131, Method: Compositional matrix adjust.
Identities = 240/633 (38%), Positives = 350/633 (55%), Gaps = 63/633 (10%)
Query 4 FSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVNTS 63
S+ DI+N P R+ FDLS K F+AK+GELLP+ +PGD F + + FTRTQP+NTS
Sbjct 1 MSMADIKNRPSRNGFDLSFKKNFTAKAGELLPVMTKVVLPGDSFNINLRSFTRTQPLNTS 60
Query 64 AYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGTQT--TALTLGNYLPTISSSQL 121
A+ R+REYYD+++VP +W I+QM +NVQHA T L +P +S Q+
Sbjct 61 AFARMREYYDFYFVPFEQMWNKFDSCITQMNANVQHASGPTLDDNTPLSGRMPYFTSEQI 120
Query 122 SAVCS--RLSGKTNYFGYDRSDLSYKLMQYLRVG--NSGQSSVNFGTSVPVSDTSYTQAY 177
+ + + + N FG++RS L+ KL+QYL G NS S N ++ P+
Sbjct 121 ADYLNDQATAARKNPFGFNRSTLTCKLLQYLGYGDYNSFDSETNTWSAKPL--------- 171
Query 178 RFNLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLPSPTDPYWN 237
+NL+LS FP LAY+K D++RY+QW+ ++P +N+DY GT+ P+D
Sbjct 172 LYNLELSPFPLLAYQKIYSDFYRYTQWEKTNPSTFNLDYIKGTSDLQMDLTGLPSD---- 227
Query 238 NNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGL------------ 285
+N FD+ YCN+ KD+F G+LP AQ+G S + + N + G
Sbjct 228 DNNFFDIRYCNYQKDMFHGVLPVAQYGSASVVPINGQLNVISNGDSGPIFKTSTPDPGTP 287
Query 286 SNAQVHVGSKVSSSSEEYNL---LVTEGGSSDQLVVNFAGRS------------------ 324
+ V VG + + + + + G S+D F +
Sbjct 288 GTSYVTVGGNIGVDNRSFGVSGSTLNVGKSADPSGYGFPSNASTRSLLWENPNLIIENNQ 347
Query 325 GFSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVDVGENMSGMSTYIGGDSSSLD 384
GF +LALR+ E LQ+WKE+S++ ++Y++QI+ H+G+ V + +S + Y+GG ++SLD
Sbjct 348 GFYVPILALRQAEFLQKWKEVSVSGEEDYKSQIEKHWGIKVSDFLSHQARYLGGCATSLD 407
Query 385 ISEVVNTNLQSGNSQSEAVIAGKGVGSSQGSEKFEAR-DWGVLMCIYHNVPLLDYVSSAP 443
I+EV+N N+ N+ A IAGKG + GS +FE++ ++G++MCIYH +P++DYV S
Sbjct 408 INEVINNNITGDNA---ADIAGKGTFTGNGSIRFESKGEYGIIMCIYHVLPIVDYVGSGV 464
Query 444 DPQFFVTQNTDLPIPELDSIGMQSVPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTS 503
D + T PIPELD IGM+SVP+ N KE T SAD +GY PRY WKTS
Sbjct 465 DHSCTLVDATSFPIPELDQIGMESVPLVRAMNPVKESDT--PSADTFLGYAPRYIDWKTS 522
Query 504 YDYVLGAFTTTEKEWVAPI-----TSVIWKRMLIGLTSSSGSFNYNFFKVNPSILDSIFQ 558
D +G F + + W P+ TS S FFKVNPSI+D +F
Sbjct 523 VDRSVGDFADSLRTWCLPVGDKELTSANSLNFPSNPNVEPDSIAAGFFKVNPSIVDPLFA 582
Query 559 ANANSKWDTDPFLINCAFDVKVVRNLDYSGMPY 591
A+S TD FL + FDVKVVRNLD +G+PY
Sbjct 583 VVADSTVKTDEFLCSSFFDVKVVRNLDVNGLPY 615
>gi|490418709|ref|WP_004291032.1| hypothetical protein [Bacteroides eggerthii]
gi|217986636|gb|EEC52970.1| putative capsid protein (F protein) [Bacteroides eggerthii DSM
20697]
Length=578
Score = 403 bits (1035), Expect = 3e-129, Method: Compositional matrix adjust.
Identities = 239/611 (39%), Positives = 347/611 (57%), Gaps = 56/611 (9%)
Query 2 SLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVN 61
++ SLK IRN P R+ FDLS K F+AK+GELLP+ +PGD F + + FTRTQPVN
Sbjct 3 NIMSLKSIRNKPSRNGFDLSFKKNFTAKAGELLPVMVKEVLPGDTFKINLKAFTRTQPVN 62
Query 62 TSAYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGT--QTTALTLGNYLPTISSS 119
T+A+ RIREYYD+F+VP LLW A V++QM N QHA + T L +P ++S
Sbjct 63 TAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDNPQHAVSIDPTRNFVLSGEMPYMTSE 122
Query 120 QLSAVCSRLSG-------KTNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGTSVPVSDTS 172
+++ + LS K+NYFGY+RS S KL++YL GN ++D
Sbjct 123 AIASYINALSTASALADYKSNYFGYNRSKSSVKLLEYLGYGNYESF---------LTDDW 173
Query 173 YTQAYRFNLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLPSPT 232
T NL+ +IF LAY+K D++R SQW+ SP +N+DY G++ +L + +
Sbjct 174 NTAPLMANLNHNIFGLLAYQKIYSDFYRDSQWERVSPSTFNVDYLDGSSMNLDN---AYS 230
Query 233 DPYWNNNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGLSNAQVHV 292
++ N FDL YCNW KD+F G+LP Q+G+ + V ++T V L LSN V
Sbjct 231 TEFYQNYNFFDLRYCNWQKDLFHGVLPHQQYGETA---VASITPDVTGKLT-LSNFST-V 285
Query 293 GSKVSSSSEEYNLLVTEGGSSDQLVVNFAGRSGFSFDVLALRRGEALQRWKEISLNVPQN 352
G+ +++S G++ + + F S +L LR+ E LQ+WKEI+ + ++
Sbjct 286 GTSPTTAS----------GTATKNLPAFDTVGDLS--ILVLRQAEFLQKWKEITQSGNKD 333
Query 353 YRAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSEAVIAGKGVGSS 412
Y+ Q++ H+GV VG+ S + TY+GG SSS+DI+EV+NTN+ + A IAGKGVG +
Sbjct 334 YKDQLEKHWGVSVGDGFSELCTYLGGVSSSIDINEVINTNI---TGSAAADIAGKGVGVA 390
Query 413 QGSEKFEARD-WGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIGMQSVPVS 471
G F + +G++MCIYH +PLLDY + DP F +TD IPE D +GMQS+P+
Sbjct 391 NGEINFNSNGRYGLIMCIYHCLPLLDYTTDMLDPAFLKVNSTDYAIPEFDRVGMQSMPLV 450
Query 472 MYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVAPITSV-IWKRM 530
N + +++ +GY+PRY +KTS D +G F T WV ++ + K++
Sbjct 451 QLMNPLRSFA---NASGLVLGYVPRYIDYKTSVDQSVGGFKRTLNSWVISYGNISVLKQV 507
Query 531 LI----------GLTSSSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKV 580
+ S N+ FFKVNP LD IF A +TD FL + FD+K
Sbjct 508 TLPNDAPPIEPSEPVPSVAPMNFTFFKVNPDCLDPIFAVQAGDDTNTDQFLCSSFFDIKA 567
Query 581 VRNLDYSGMPY 591
VRNLD G+PY
Sbjct 568 VRNLDTDGLPY 578
>gi|547226430|ref|WP_021963493.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103382|emb|CCY83994.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=573
Score = 402 bits (1033), Expect = 5e-129, Method: Compositional matrix adjust.
Identities = 247/609 (41%), Positives = 347/609 (57%), Gaps = 57/609 (9%)
Query 2 SLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVN 61
S+ SL ++N +R+ FDLS K AF+AK GELLPI PGDKF ++ Q FTRTQPVN
Sbjct 3 SVMSLTALKNSVKRNGFDLSFKNAFTAKVGELLPIMCKEVYPGDKFNIRGQAFTRTQPVN 62
Query 62 TSAYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGTQTTALTLGNYLPTISSSQL 121
++AY+R+REYYD+++VP LLW AP + M + HA +++ L P + +
Sbjct 63 SAAYSRLREYYDFYFVPYRLLWNMAPTFFTNM-PDPHHAADLVSSVNLSQRHPWFTFFDI 121
Query 122 SAVCSRLSG--------KTNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGT---SVPV-S 169
L+ + N+FG+ R +LS KL+ YL G FG SV V S
Sbjct 122 MEYLGNLNSLSGAYEKYQKNFFGFSRVELSVKLLNYLNYG--------FGKDYESVKVPS 173
Query 170 DTSYTQAYRFNLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLP 229
D+ ++ LS FP LAY+K C+DYFR QWQ ++PY +N+DY G +S +
Sbjct 174 DSD-------DIVLSPFPLLAYQKICEDYFRDDQWQSAAPYRYNLDYLYGKSSGFHIPMS 226
Query 230 SPTDPYWNNNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGLSNAQ 289
S T+ + N T+FDL YCN+ KD F G+LP AQ+GDVS + P+
Sbjct 227 SFTNDAFKNPTMFDLNYCNFQKDYFTGMLPRAQYGDVSVAS--------PIF------GD 272
Query 290 VHVGSKVSSSSEEYNLLVTEGGSSDQ---LVVNFAGRSGFSFDVLALRRGEALQRWKEIS 346
+ +G SSS + +G ++ Q LVVN + VLALR+ E LQ+W+EI+
Sbjct 273 LDIG---DSSSLTFASAPQQGANTIQSGVLVVNNNSNTTAGLSVLALRQAECLQKWREIA 329
Query 347 LNVPQNYRAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSEAVIAG 406
+ +Y+ Q++ HF V +SG Y+GG +S+LDISEVVNTNL N +A I G
Sbjct 330 QSGKMDYQTQMQKHFNVSPSATLSGHCKYLGGWTSNLDISEVVNTNLTGDN---QADIQG 386
Query 407 KGVGSSQGSE-KFEARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIGM 465
KG G+ G++ FE+ + G++MCIYH +PLLD+ + Q F T TD IPE DS+GM
Sbjct 387 KGTGTLNGNKVDFESSEHGIIMCIYHCLPLLDWSINRIARQNFKTTFTDYAIPEFDSVGM 446
Query 466 QSVPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVAPITS- 524
Q + S ++L + SS + MGY+PRY KTS D + G+F T WV+P+T
Sbjct 447 QQLYPSEMIFGLEDLPSDPSSIN--MGYVPRYADLKTSIDEIHGSFIDTLVSWVSPLTDS 504
Query 525 --VIWKRMLIGLTSSSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKVVR 582
+++ S + YNFFKVNP I+D+IF A+S +TD LIN FD+K VR
Sbjct 505 YISAYRQACKDAGFSDITMTYNFFKVNPHIVDNIFGVKADSTINTDQLLINSYFDIKAVR 564
Query 583 NLDYSGMPY 591
N DY+G+PY
Sbjct 565 NFDYNGLPY 573
>gi|496050829|ref|WP_008775336.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448893|gb|EEO54684.1| putative capsid protein (F protein) [Bacteroides sp. 2_2_4]
Length=580
Score = 399 bits (1026), Expect = 7e-128, Method: Compositional matrix adjust.
Identities = 248/615 (40%), Positives = 348/615 (57%), Gaps = 62/615 (10%)
Query 2 SLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVN 61
++ SLK +RN R+ FDLSSK F+AK GELLP+K + +PGDK+++ + FTRTQP+N
Sbjct 3 NIMSLKSLRNKTSRNGFDLSSKRNFTAKPGELLPVKCWEVLPGDKWSIDLKSFTRTQPLN 62
Query 62 TSAYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGTQTTAL--TLGNYLPTISSS 119
T+A+ R+REYYD+++VP +LLW A V++QM N QHA + + L +P ++
Sbjct 63 TAAFARMREYYDFYFVPYNLLWNKANTVLTQMYDNPQHATSYIPSANQALAGVMPNVTCK 122
Query 120 QLS--------AVCSRLSGKTNYFGYDRSDLSYKLMQYLRVGN---SGQSSVNFGTSVPV 168
++ V + S + NYFGY RS + KL++YL GN S N T P+
Sbjct 123 GIADYLNLVAPDVTTTNSYEKNYFGYSRSLGTAKLLEYLGYGNFYTYATSKNNTWTKSPL 182
Query 169 SDTSYTQAYRFNLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANL 228
S NL L+I+ LAY+K D+ R SQW+ SP +N+DY +GT
Sbjct 183 SS---------NLQLNIYGVLAYQKIYADHIRDSQWEKVSPSCFNVDYLSGTVDSAMTID 233
Query 229 PSPTD----PYWNNNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQG 284
T P++N +FDL YCNW KD+F G+LP Q+GD +++ V N++N +
Sbjct 234 SMITGQGFAPFYN---MFDLRYCNWQKDLFHGVLPRQQYGDTAAVNV-NLSNVLSAQYM- 288
Query 285 LSNAQVHVGSKVSS---SSEEYNLLVTEGGSSDQLVVNFAGRSGFSFDVLALRRGEALQR 341
Q G V SS NL G +F VLALR+ E LQ+
Sbjct 289 ---VQTPDGDPVGGSPFSSTGVNLQTVNGSG--------------TFTVLALRQAEFLQK 331
Query 342 WKEISLNVPQNYRAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSE 401
WKEI+ + ++Y+ QI+ H+ V VGE S MS Y+GG ++SLDI+EVVN N+ N+
Sbjct 332 WKEITQSGNKDYKDQIEKHWNVSVGEAYSEMSLYLGGTTASLDINEVVNNNITGSNA--- 388
Query 402 AVIAGKGVGSSQGSEKFEARD-WGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPEL 460
A IAGKGV G F+A + +G++MCIYH++PLLDY + +P F +TD IPE
Sbjct 389 ADIAGKGVVVGNGRISFDAGERYGLIMCIYHSLPLLDYTTDLVNPAFTKINSTDFAIPEF 448
Query 461 DSIGMQSVPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVA 520
D +GM+SVP+ N L + ++ +GY PRY S+KT D +GAF TT K WV
Sbjct 449 DRVGMESVPLVSLMN---PLQSSYNVGSSILGYAPRYISYKTDVDSSVGAFKTTLKSWVM 505
Query 521 PI--TSVIWK-RMLIGLTSSSGSF-NYNFFKVNPSILDSIFQANANSKWDTDPFLINCAF 576
SVI + +S G+ NY FKVNP+ +D +F A++ DTD FL + F
Sbjct 506 SYDNQSVINQLNYQDDPNNSPGTLVNYTNFKVNPNCVDPLFAVAASNSIDTDQFLCSSFF 565
Query 577 DVKVVRNLDYSGMPY 591
DVKVVRNLD G+PY
Sbjct 566 DVKVVRNLDTDGLPY 580
>gi|494822885|ref|WP_007558293.1| hypothetical protein [Bacteroides plebeius]
gi|198272099|gb|EDY96368.1| putative capsid protein (F protein) [Bacteroides plebeius DSM
17135]
Length=613
Score = 367 bits (941), Expect = 7e-115, Method: Compositional matrix adjust.
Identities = 220/615 (36%), Positives = 325/615 (53%), Gaps = 36/615 (6%)
Query 2 SLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVN 61
++ S+K +RN P R+ +DL+ K+ F+AK+G L+P+ W +P D + F RTQP+N
Sbjct 10 NIMSMKSVRNKPTRAGYDLTQKINFTAKAGSLIPVWWTPVLPFDDLNATVKSFVRTQPLN 69
Query 62 TSAYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGTQTTA--LTLGNYLPTISSS 119
T+A+ R+R Y+D+++VP +W P I+QM++N+ HA A + L + LP ++
Sbjct 70 TAAFARMRGYFDFYFVPFRQMWNKFPTAITQMRTNLLHASGPVLADNVPLSDELPYFTAE 129
Query 120 QLSAVCSRLSGKTNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGTSVPVSDTSYTQAYRF 179
Q++ L+ N FGY R+ L +++YL G+ V T T+
Sbjct 130 QVADYIVSLADSKNQFGYYRAWLVCIILEYLGYGDFYPYIVEAAGG--EGATWATRPMLN 187
Query 180 NLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLPSPTDPYWNNN 239
NL S FP AY+K D+ RY+QW+ S+P +NIDY +G+ L L + + ++
Sbjct 188 NLKFSPFPLFAYQKIYADFNRYTQWERSNPSTFNIDYISGSADSL--QLDFTVEGFKDSF 245
Query 240 TLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTV-----PVSLQGLSNAQVHVGS 294
LFD+ Y NW +D+ G +P AQ+G+ S++ V V P G G+
Sbjct 246 NLFDMRYSNWQRDLLHGTIPQAQYGEASAVPVSGSMQVVEGPTPPAFTTGQDGVAFLNGN 305
Query 295 KVSSSSEEYNLLVTEGGSSDQLVVN-------FAGRSGFSFDVLALRRGEALQRWKEISL 347
S Y T G S L N G S F +LALRR EA Q+WKE++L
Sbjct 306 VTIQGSSGYLQAQTSVGESRILRFNNTNSGLIVEGDSSFGVSILALRRAEAAQKWKEVAL 365
Query 348 NVPQNYRAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSEAVIAGK 407
++Y +QI+AH+G V + S M ++G + L I+EVVN N+ N+ A IAGK
Sbjct 366 ASEEDYPSQIEAHWGQSVNKAYSDMCQWLGSINIDLSINEVVNNNITGENA---ADIAGK 422
Query 408 GVGSSQGSEKFE-ARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIGMQ 466
G S GS F +G++MC++H +P LDY++SAP +T D PIPE D IGM+
Sbjct 423 GTMSGNGSINFNVGGQYGIVMCVFHVLPQLDYITSAPHFGTTLTNVLDFPIPEFDKIGME 482
Query 467 SVPVSMYSNSDKELVTGFS-SADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVAPITSV 525
VPV N K F S + GY P+YY+WKT+ D +G F + K W+ P
Sbjct 483 QVPVIRGLNPVKPKDGDFKVSPNLYFGYAPQYYNWKTTLDKSMGEFRRSLKTWIIPFDD- 541
Query 526 IWKRMLIGLTS---------SSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAF 576
L+ S + S FFKV+PS+LD++F ANS +TD FL + F
Sbjct 542 ---EALLAADSVDFPDNPNVEADSVKAGFFKVSPSVLDNLFAVKANSDLNTDQFLCSTLF 598
Query 577 DVKVVRNLDYSGMPY 591
DV VVR+LD +G+PY
Sbjct 599 DVNVVRSLDPNGLPY 613
>gi|575094321|emb|CDL65708.1| unnamed protein product [uncultured bacterium]
Length=642
Score = 245 bits (626), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 200/652 (31%), Positives = 304/652 (47%), Gaps = 79/652 (12%)
Query 2 SLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVN 61
++ L ++N P R++FDLS + F+AK GELLP PGD + +FTRT P+
Sbjct 6 NIMGLHGLKNKPSRNSFDLSHRNMFTAKVGELLPCFVQELNPGDSVKVSSSYFTRTAPLQ 65
Query 62 TSAYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGTQTTALTL-GN-----YLPT 115
++A+TR+RE +F+VP LW+ + M N A +L GN +P
Sbjct 66 SNAFTRLRENVQYFFVPYSALWKYFDSQVLNMTKNANGGDISRIASSLVGNQKVTTQMPC 125
Query 116 ISSSQLSAVCSRLSGKTNY-----------FGYDRSDLSYKLMQYLRVGNSGQSSVNFGT 164
++ L A + ++ G R S KL+Q L GN + NF
Sbjct 126 VNYKTLHAYLLKFINRSTVGSDGSVGPEFNRGCYRHAESAKLLQLLGYGNFPEQFANF-- 183
Query 165 SVPVSDTSYTQA--------YRFNLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDY 216
V++ + Q+ Y + LSIF LAY K C D++ Y QWQ + L N+DY
Sbjct 184 --KVNNDKHNQSGQNFKDVTYNNSPYLSIFRLLAYHKICNDHYLYRQWQPYNASLCNVDY 241
Query 217 FTGTTSHLF----ANLPSPTDPYWNNN-TLFDLEYCNWNKDIFMGILPDAQFG--DVSSI 269
T +S L A L P D L D+ + N D F G+LP +QFG V ++
Sbjct 242 LTPNSSSLLSIDDALLSIPDDSIKAEKLNLLDMRFSNLPLDYFTGVLPTSQFGSESVVNL 301
Query 270 TVGNVTNTVPVSLQGLSN----------AQVHVGSKVSSSSEEYNLLVTEGGSSDQLVVN 319
+GN + + L G ++ + + +V+SS+ L G+
Sbjct 302 NLGNASGS--AVLNGTTSKDSGRWRTTTGEWEMEQRVASSANGNLKLDNSNGTFISHDHT 359
Query 320 FAGRSGF------SFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVDVGENMSGMS 373
F+G + ++ALR A Q++KEI L ++++Q++AHFG+ E S
Sbjct 360 FSGNVAINTSLSGNLSIIALRNALAAQKYKEIQLANDVDFQSQVEAHFGIKPDEKNEN-S 418
Query 374 TYIGGDSSSLDISEVVNTNLQSGNSQSEAVIAGKGVGSSQGSEKFEARDWGVLMCIYHNV 433
+IGG SS ++I+E +N NL SG++++ A +G GS+ S KF A+ +GV++ IY
Sbjct 419 LFIGGSSSMININEQINQNL-SGDNKATYGAAPQGNGSA--SIKFTAKTYGVVIGIYRCT 475
Query 434 PLLDYVSSAPDPQFFVTQNTDLPIPELDSIGMQS------VPVSMYSNSDKELVTG-FSS 486
P+LD+ D F T +D IPE+DSIGMQ + Y++ K G SS
Sbjct 476 PVLDFAHLGIDRTLFKTDASDFVIPEMDSIGMQQTFRCEVAAPAPYNDEFKAFRVGDGSS 535
Query 487 ADF--TMGYLPRYYSWKTSYDYVLGAFTTTEKEWVA-----PITSVIWKRMLIGLTSSSG 539
D T GY PRY +KTSYD GAF + K WV I + +W G+ +
Sbjct 536 PDMSETYGYAPRYSEFKTSYDRYNGAFCHSLKSWVTGINFDAIQNNVWN-TWAGINAP-- 592
Query 540 SFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKVVRNLDYSGMPY 591
N F P I+ ++F ++ + D D + RNL G+PY
Sbjct 593 ----NMFACRPDIVKNLFLVSSTNNSDDDQLYVGMVNMCYATRNLSRYGLPY 640
>gi|496521299|ref|WP_009229582.1| capsid protein [Prevotella sp. oral taxon 317]
gi|288330570|gb|EFC69154.1| putative capsid protein (F protein) [Prevotella sp. oral taxon
317 str. F0108]
Length=541
Score = 202 bits (513), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 184/610 (30%), Positives = 277/610 (45%), Gaps = 91/610 (15%)
Query 1 MSLFSLKDIR----NHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTR 56
MSL + I+ N PR SAFDLS K ++A +G LLP+ M D ++ Q F R
Sbjct 1 MSLKKVPQIKPSRANRPR-SAFDLSQKHLYTAPAGALLPVLSVDLMFHDHIRIQAQDFMR 59
Query 57 TQPVNTSAYTRIREYYDWFWVPLHLLWRNAPEVISQM---QSNVQHAGTQTTALTLGNYL 113
T P+N++A+ +R Y++F+VP LW + I+ M +S+V + AL + +
Sbjct 60 TMPMNSAAFISMRGVYEFFFVPYSQLWHPYDQFITSMNDYRSSVVSSAAGDKAL---DSV 116
Query 114 PTISSSQLSAVCSRLSGKTNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGTSVPVSDTSY 173
P + + + + K + FGY S+ S +LM L G SS T VP+ T
Sbjct 117 PNVKLADMYKFVRERTDK-DIFGYPHSNNSCRLMDLLGYGKPITSS---KTPVPLLYTG- 171
Query 174 TQAYRFNLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLPSPTD 233
++++F LAY K DY+R + ++ Y +NID+ GT F
Sbjct 172 --------NVNLFRLLAYNKIYSDYYRNTTYEGVDVYSFNIDHKKGT----FVPTADEFK 219
Query 234 PYWNNNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGLSNAQVHVG 293
Y N L Y N D + + P F T+G+ + + S+ LS+ G
Sbjct 220 KYLN------LHYRNAPLDFYTNLRPTPLF------TIGSDSFS---SVLQLSDPTGSAG 264
Query 294 SKVSSSSEEYNLLVTEGGSSDQLVVNFAGRSGFSFDVLALRRGEALQRWKEISLNVPQNY 353
+S + N+ S D L +V A+R AL + IS+ + Y
Sbjct 265 FSADGNSAKLNM-----ASPDVL------------NVSAIRSAFALDKLLSISMRAGKTY 307
Query 354 RAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSE----------AV 403
QI+AHFGV V E G Y+GG S++ + +V T+ + + SE
Sbjct 308 AEQIEAHFGVTVSEGRDGQVYYLGGFDSNVQVGDVTQTSGTTNPNVSEVGNAKLAGYLGK 367
Query 404 IAGKGVGSSQGSEKFEARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQNT--DLPIPELD 461
I GKG GS G +F+A++ GVLMCIY VP + Y DP FV + T D IPE +
Sbjct 368 ITGKGTGSGYGEIQFDAKEPGVLMCIYSVVPAMQYDCMRLDP--FVAKQTRGDYFIPEFE 425
Query 462 SIGMQS-VPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVA 520
++GMQ VP + N K D + G+ PRY +KT++D G F E
Sbjct 426 NLGMQPIVPAFVSLNRAK---------DNSYGWQPRYSEYKTAFDINHGQFANGE----- 471
Query 521 PITSVIWKRMLIGLTSSSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKV 580
P++ W + + +FN K+NP LDS+F N N TD F+++
Sbjct 472 PLS--YWSIARARGSDTLNTFNVAALKINPHWLDSVFAVNYNGTEVTDCMFGYAHFNIEK 529
Query 581 VRNLDYSGMP 590
V ++ GMP
Sbjct 530 VSDMTEDGMP 539
>gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis]
gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=553
Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 165/612 (27%), Positives = 267/612 (44%), Gaps = 85/612 (14%)
Query 1 MSLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPV 60
+S+ +K R + R+AFDLS + F+A +G LLP+ +P D + Q F RT P+
Sbjct 3 VSIPKIKATRPNRNRNAFDLSQRHLFTAHAGMLLPVLNLDLIPHDHVEINAQDFMRTLPM 62
Query 61 NTSAYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGTQTTALTLGNYLPTISS-- 118
NT+A+ +R Y++F+VP H LW + I+ M A T +P +
Sbjct 63 NTAAFASMRGVYEFFFVPYHQLWAQFDQFITGMNDFHSSANKSIQGGTSPLQVPYFNVDS 122
Query 119 --SQLSAVCSRLSGKTNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGTSVPVSDTSYTQA 176
+ L+ SG T+ Y +++L+ L G S FGT+ P +
Sbjct 123 VFNSLNTGKESGSGSTDDLQYKFKYGAFRLLDLLGYGRKFDS---FGTAYPDN----VSG 175
Query 177 YRFNLD--LSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTG--TTSHLFANLPSPT 232
+ NLD S+F LAY K QDY+R S +++ +N D F G + + A+
Sbjct 176 LKNNLDYNCSVFRILAYNKIYQDYYRNSNYENFDTDSFNFDKFKGGLVDAKVVAD----- 230
Query 233 DPYWNNNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVP---VSLQGLSNAQ 289
LF L Y N D F + F ++ + N P V G + +
Sbjct 231 --------LFKLRYRNAQTDYFTNLRQSQLFSFTTAFEDVDNINIAPRDYVKSDGSNFTR 282
Query 290 VHVGSKVSSSSEEYNLLVTEGGSSDQLVVNFAGRSGFSFDVLALRRGEALQRWKEISLNV 349
V+ G SS EG F V +LR A+ + +++
Sbjct 283 VNFGVDTDSS---------EG----------------DFSVSSLRAAFAVDKLLSVTMRA 317
Query 350 PQNYRAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSE-------- 401
+ ++ Q++AH+GV++ ++ G Y+GG S + +S+V T SG + +E
Sbjct 318 GKTFQDQMRAHYGVEIPDSRDGRVNYLGGFDSDMQVSDVTQT---SGTTATEYKPEAGYL 374
Query 402 AVIAGKGVGSSQGSEKFEARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELD 461
+AGKG GS +G F+A++ GVLMCIY VP + Y + DP D PE +
Sbjct 375 GRVAGKGTGSGRGRIVFDAKEHGVLMCIYSLVPQIQYDCTRLDPMVDKLDRFDYFTPEFE 434
Query 462 SIGMQSVPVSMYSNSDKELVTGFSSAD---FTMGYLPRYYSWKTSYDYVLGAFTTTEKEW 518
++GMQ + + ++ F + D +GY PRY +KT+ D G F ++
Sbjct 435 NLGMQPL--------NSSYISSFCTTDPKNPVLGYQPRYSEYKTALDVNHGQFAQSDA-- 484
Query 519 VAPITSVIWKRMLIGLTSSSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDV 578
++S W ++ FK++P L+SIF + N D C F++
Sbjct 485 ---LSS--WSVSRFRRWTTFPQLEIADFKIDPGCLNSIFPVDYNGTEANDCVYGGCNFNI 539
Query 579 KVVRNLDYSGMP 590
V ++ GMP
Sbjct 540 VKVSDMSVDGMP 551
>gi|517172762|ref|WP_018361580.1| hypothetical protein [Prevotella nanceiensis]
Length=568
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 154/592 (26%), Positives = 266/592 (45%), Gaps = 59/592 (10%)
Query 15 RSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVNTSAYTRIREYYDW 74
R+AFD+S + F+A +G LLP+ +P D + F RT P+N++A+ +R Y++
Sbjct 18 RNAFDISQRHLFTAPAGALLPVLSLDLLPHDHVEINASDFMRTLPMNSAAFMSMRGVYEF 77
Query 75 FWVPLHLLWRNAPEVISQM---QSNVQHAGTQTTALTLGNYLPTISSSQLSAVCSRLSGK 131
++VP LW + I+ M +S+ +A T + ++ +L C + K
Sbjct 78 YFVPYKQLWSGFDQFITGMSDYKSSFMYAFKGKTPPSCVSF----DVQKLVDWCKTNTAK 133
Query 132 TNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGTSVPVSDTSYTQAYRFNLDLSIFPFLAY 191
+ G+D++ Y+++ L G S+ VP ++ + T + + F LAY
Sbjct 134 -DIHGFDKNKGVYRILDLLGYGKYANSA-----GVPYTNPTSTTMGK----CTPFRGLAY 183
Query 192 KKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLPS-PTDPYWNNNTLFDLEYCNWN 250
+K D++R + +++ +N+D F G + + +P+ P D W F L Y N
Sbjct 184 QKIYNDFYRNTTYEEYQLESFNVDMFYG-SGKVKETIPNEPWDYDW-----FTLRYRNAQ 237
Query 251 KDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGLSNAQVHVGSKVSSSSEEYNLLVTEG 310
KD+ + P F ++ + P G S+ + G V+ + EY V
Sbjct 238 KDLLTNVRPTPLF---------SIDDFNPQFFTGGSDIVMEKGPNVTGGTHEYRDSVVIV 288
Query 311 GSSDQLVVNFAGRSGFSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVDVGENMS 370
G + L N V +R AL++ +++ + Y+ Q++AHFG+ V E
Sbjct 289 GKN--LKENGVDSKRTMISVADIRNAFALEKLASVTMRAGKTYKEQMEAHFGISVEEGRD 346
Query 371 GMSTYIGGDSSSLDISEVVNTNLQSGNSQSEAVIA-------GKGVGSSQGSEKFEARDW 423
G TYIGG S++ + +V ++ + + GK GS G +F+A++
Sbjct 347 GRCTYIGGFDSNIQVGDVTQSSGTTVTGTKDTSFGGYLGRTTGKATGSGSGHIRFDAKEH 406
Query 424 GVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIGMQ-----SVPVSMYSNSDK 478
G+LMCIY VP + Y S DP + D +PE +++GMQ ++ +N+
Sbjct 407 GILMCIYSLVPDVQYDSKRVDPFVQKIERGDFFVPEFENLGMQPLFAKNISYKYNNNTAN 466
Query 479 ELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVAPITSVIWKRMLIGLTSSS 538
+ + G+ PRY +KT+ D G F E P++ R S
Sbjct 467 SRIKNLGA----FGWQPRYSEYKTALDINHGQFVHQE-----PLSYWTVAR---ARGESM 514
Query 539 GSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKVVRNLDYSGMP 590
+FN + FK+NP LD +F N N TD C F++ V ++ GMP
Sbjct 515 SNFNISTFKINPKWLDDVFAVNYNGTELTDQVFGGCYFNIVKVSDMSIDGMP 566
>gi|490477384|ref|WP_004347761.1| capsid protein [Prevotella buccalis]
gi|281300712|gb|EFA93043.1| putative capsid protein (F protein) [Prevotella buccalis ATCC
35310]
Length=552
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 164/610 (27%), Positives = 261/610 (43%), Gaps = 92/610 (15%)
Query 6 LKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVNTSAY 65
+K R + R+AFDLS K F+A +G LLP+ +P D +++ F R P+N++A+
Sbjct 8 IKASRANRPRNAFDLSQKHLFTAHAGMLLPVMTLDLIPHDHVSIQATDFMRCLPMNSAAF 67
Query 66 TRIREYYDWFWVPLHLLWRNAPEVISQM---QSNVQHAGTQTTALTLGNYLPTISSSQL- 121
+R Y++F+VP LW + I+ M +S +Q ++ + + +P+ +L
Sbjct 68 MSMRSVYEFFFVPYSQLWHPFDQFITGMNDYRSVLQSDLYKSKSPLV---IPSFKRKELY 124
Query 122 ------SAVCSRLSGKTNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGTSVPVSDTSYTQ 175
++ S + + FG+ +L+ L +G V +S
Sbjct 125 ELFNAPGGFLNQQSNQPDIFGFKSRFNFLRLLDLL----------GYGVYVNADGSSRID 174
Query 176 AYRFNLD----LSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLPSP 231
A+ LD LSIF AY+K D++R + ++ +++D T + S + A
Sbjct 175 AFSKLLDDTEKLSIFRLAAYQKIYSDFYRNTTYEAVDVSSFSLDNITDSISAINAFKRFG 234
Query 232 TDPYWNNNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGLSNAQVH 291
T L Y N D F TN P L L N ++
Sbjct 235 T-----------LRYRNAQLDYF--------------------TNLRPTPLFDLDNPSLN 263
Query 292 VGSKVSSSSEEYNLLVTEGGSSDQLVVNFAGRSGFSFDVLALRRGEALQRWKEISLNVPQ 351
+++ ++ SD VNF S V ++R AL + I+ +
Sbjct 264 SFYNTPGNADSVSI------DSDSNAVNFQLDSDL-LTVQSIRNAFALDKLMRITQRAGK 316
Query 352 NYRAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSEAVI------- 404
Y QIKAHFG +V E G YIGG S++ + +V + + + + I
Sbjct 317 TYAEQIKAHFGFEVSEGRDGRVNYIGGFDSNIQVGDVTQMSGTTASPEQGVSIKHGGYLG 376
Query 405 --AGKGVGSSQGSEKFEARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQ--NTDLPIPEL 460
GK GS G +F+A + G+LMCIY VP + Y ++ DP FVT+ D +PE
Sbjct 377 RVTGKAQGSGSGHIEFDAHEHGILMCIYSLVPDMQYDATRIDP--FVTKLSRGDFFMPEF 434
Query 461 DSIGMQSVPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVA 520
+ +GMQ P+ SD T + G+ PRY +KTS D G F +
Sbjct 435 EDLGMQ--PLQTRYISDIRTQT-----EKFKGWQPRYSEYKTSLDINHGQFANGQ----- 482
Query 521 PITSVIWKRMLIGLTSSSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKV 580
P++ R G T +F+ K+NP LDSIF N N TD C F+V+
Sbjct 483 PLSYWTVGRGRAGETLE--TFDIASLKINPKWLDSIFAVNYNGTQITDCVFGGCQFNVQK 540
Query 581 VRNLDYSGMP 590
V ++ +G P
Sbjct 541 VSDMSENGEP 550
Lambda K H a alpha
0.318 0.132 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4376806011489