bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-33_CDS_annotation_glimmer3.pl_2_3
Length=113
Score E
Sequences producing significant alignments: (Bits) Value
gi|297599109|ref|NP_001046678.2| Os02g0318500 37.0 1.7
gi|218190595|gb|EEC73022.1| hypothetical protein OsI_06954 37.0 1.7
gi|27368831|emb|CAD59573.1| PDR-like ABC transporter 37.0 1.7
gi|222622715|gb|EEE56847.1| hypothetical protein OsJ_06460 37.0 1.8
gi|664692560|gb|AIF45148.1| hypothetical protein X953_02365 36.2 2.6
>gi|297599109|ref|NP_001046678.2| Os02g0318500 [Oryza sativa Japonica Group]
gi|255670842|dbj|BAF08592.2| Os02g0318500 [Oryza sativa Japonica Group]
Length=1315
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 21/57 (37%), Positives = 28/57 (49%), Gaps = 6/57 (11%)
Query 47 KNQLSLQELVFSELGYSDELF-----DSFYIKPCIKKLKNSYTDKWKDTNYREVHYF 98
KNQ ++EL GY D LF SFYI+ C+ L Y WK+ +Y + Y
Sbjct 1009 KNQELIEELSIPPPGYRDLLFATKYSQSFYIQ-CVANLWKQYKSYWKNPSYNSLRYL 1064
>gi|218190595|gb|EEC73022.1| hypothetical protein OsI_06954 [Oryza sativa Indica Group]
Length=1195
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 21/57 (37%), Positives = 28/57 (49%), Gaps = 6/57 (11%)
Query 47 KNQLSLQELVFSELGYSDELF-----DSFYIKPCIKKLKNSYTDKWKDTNYREVHYF 98
KNQ ++EL GY D LF SFYI+ C+ L Y WK+ +Y + Y
Sbjct 889 KNQELIEELSIPPPGYRDLLFATKYSQSFYIQ-CVANLWKQYKSYWKNPSYNSLRYL 944
>gi|27368831|emb|CAD59573.1| PDR-like ABC transporter [Oryza sativa Japonica Group]
gi|50251734|dbj|BAD27654.1| PDR-like ABC transporter [Oryza sativa Japonica Group]
gi|50252713|dbj|BAD28939.1| PDR-like ABC transporter [Oryza sativa Japonica Group]
Length=1468
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 21/57 (37%), Positives = 28/57 (49%), Gaps = 6/57 (11%)
Query 47 KNQLSLQELVFSELGYSDELF-----DSFYIKPCIKKLKNSYTDKWKDTNYREVHYF 98
KNQ ++EL GY D LF SFYI+ C+ L Y WK+ +Y + Y
Sbjct 1162 KNQELIEELSIPPPGYRDLLFATKYSQSFYIQ-CVANLWKQYKSYWKNPSYNSLRYL 1217
>gi|222622715|gb|EEE56847.1| hypothetical protein OsJ_06460 [Oryza sativa Japonica Group]
Length=1126
Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 21/57 (37%), Positives = 28/57 (49%), Gaps = 6/57 (11%)
Query 47 KNQLSLQELVFSELGYSDELF-----DSFYIKPCIKKLKNSYTDKWKDTNYREVHYF 98
KNQ ++EL GY D LF SFYI+ C+ L Y WK+ +Y + Y
Sbjct 820 KNQELIEELSIPPPGYRDLLFATKYSQSFYIQ-CVANLWKQYKSYWKNPSYNSLRYL 875
>gi|664692560|gb|AIF45148.1| hypothetical protein X953_02365 [Virgibacillus sp. SK37]
Length=408
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query 19 RFDKMKGSLRSKLKAVALFYDYRDYESLKN-QLSLQELVFS-ELGYSDELFDSFYIKPCI 76
+F KG ++ +K + L DYR S + ++ ++ V+S EL Y +L +SFY +P I
Sbjct 36 KFKVEKGDIKD-IKNLKLVGDYRQGMSAEGVAITSEDTVYSSELSYFSQLNNSFYTEPAI 94
Query 77 KKLKNSY 83
++L+N+Y
Sbjct 95 QQLQNNY 101
Lambda K H a alpha
0.323 0.140 0.424 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 434988574272