bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-26_CDS_annotation_glimmer3.pl_2_6
Length=107
Score E
Sequences producing significant alignments: (Bits) Value
gi|655126327|ref|WP_028573442.1| taurine ABC transporter permease 42.7 0.013
gi|667765371|ref|WP_031386338.1| taurine ABC transporter permease 38.9 0.27
gi|548188961|ref|WP_022409828.1| uncharacterized protein 38.5 0.40
gi|635636972|ref|WP_024283867.1| hypothetical protein 38.1 0.59
gi|573500917|gb|ETT01370.1| glycosyltransferase, group 1 family ... 37.0 1.2
gi|497938315|ref|WP_010252471.1| excinuclease ABC subunit A 35.4 4.4
gi|648647173|ref|WP_026338924.1| glycosyl transferase 35.0 6.0
gi|521960570|ref|WP_020472175.1| hypothetical protein 35.0 7.0
>gi|655126327|ref|WP_028573442.1| taurine ABC transporter permease [Desulfonatronum lacustre]
Length=337
Score = 42.7 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 29/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (7%)
Query 8 NGCINDPNLTYQAEPREVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEV 67
N I P L Q E + LR ++ G + ++ED Y ++DG++ + D+ T R ++
Sbjct 218 NAIIVSPQLAAQPEAVKGFLRAVVRGWAETLEDPAAAIAYVRERDGLI-DVDLETRRLKL 276
Query 68 AIDAMDKINQSAANQIAKNKGE------TESVKNFGTEVKTDPE 105
AI+ + +AAN + E E V FG PE
Sbjct 277 AIETSVATDYAAANGMGDVDDERLVKAIAEVVNAFGLSTTPAPE 320
>gi|667765371|ref|WP_031386338.1| taurine ABC transporter permease [Desulfonatronum thiodismutans]
Length=333
Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 28/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (7%)
Query 8 NGCINDPNLTYQAEPREVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEV 67
N I P L Q E + LR ++ G + ++ED Y ++DG++ + D+ T R ++
Sbjct 214 NAIIVSPQLAAQPEVVKGFLRAVVRGWAETLEDPAAAIAYVRQRDGLI-DVDLETRRLKL 272
Query 68 AIDAMDKINQSAANQIAKNKGE------TESVKNFGTEVKTDPE 105
AI+ +AAN + E E V F PE
Sbjct 273 AIETSVATEYAAANGMGDVDDERLAKAIAEVVNAFDLSTTPAPE 316
>gi|548188961|ref|WP_022409828.1| uncharacterized protein [Ruminococcus sp. CAG:330]
gi|524706212|emb|CDE12308.1| uncharacterized protein BN611_00105 [Ruminococcus sp. CAG:330]
Length=326
Score = 38.5 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query 23 REVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEVAIDAMDKINQSAANQ 82
+EV L+ + + ES S D F ++ EK + + PE I++ +++ I+ D I + A Q
Sbjct 145 KEVALKPVKAAESLSFNDYRFENVFAEKFNQLSPEEPIQS-LYDLDINPWD-IEEPACKQ 202
Query 83 IAKNKGETESVKNFGTEVKTDP 104
KN G + F ++DP
Sbjct 203 FIKNSGWGHKIGGFPAFTQSDP 224
>gi|635636972|ref|WP_024283867.1| hypothetical protein [Algoriphagus marincola]
Length=467
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (6%)
Query 24 EVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEVAIDA-----MDKINQS 78
E KLR IS ++ ++ D + I G++ E D+ + + AI A +++ S
Sbjct 188 EYKLRLEISEQTLNLRDSMLNIIEERFDKGIIAEIDLNQAQIQEAIAAGSIPIWERLIVS 247
Query 79 AANQIAKNKGETESVKNFGTEVKTDPEK 106
+ NQ+++ GE KN G E+ PE+
Sbjct 248 SENQLSRLVGELPESKNIGIELLDQPEE 275
>gi|573500917|gb|ETT01370.1| glycosyltransferase, group 1 family protein [Providencia alcalifaciens
PAL-3]
gi|577061970|gb|EUC99001.1| glycosyltransferase, group 1 family protein [Providencia alcalifaciens
PAL-1]
Length=360
Score = 37.0 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (59%), Gaps = 2/58 (3%)
Query 11 INDPNLTYQAEPREVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYD--IRTDRFE 66
IN+ N+ + E K++KIIS +++ + P I+ + KD +L EY+ I T R+E
Sbjct 206 INEFNIFGASLEEEAKIKKIISNIPNNISIKIHPPIFNQDKDNILSEYNIYIMTSRYE 263
>gi|497938315|ref|WP_010252471.1| excinuclease ABC subunit A [Myroides injenensis]
Length=945
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/71 (31%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query 24 EVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEVAI-DAMDKINQSAANQ 82
E+ L+KII E S+++G + TEKK + + +I ++++ ++ D + KI A +
Sbjct 292 EINLKKIIPDEKLSIKNGGLAPLGTEKKSWIFKQLEIIAEKYKFSLNDPISKIPSEAMDI 351
Query 83 IAKNKGETESV 93
I K E+ SV
Sbjct 352 ILKGGQESFSV 362
>gi|648647173|ref|WP_026338924.1| glycosyl transferase [Fusobacterium russii]
Length=292
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (13%)
Query 6 NRNGCINDPNLTYQAEPREV------KLRKIISGES-SSMEDGVFPTIYTEKKDGV-LPE 57
N N + +Q +PR + L KI+ G S S DG F IY EKKDG+ +
Sbjct 5 NLYCFFNKCQIKFQKKPRHIIVNKLETLNKILEGYSISRYGDGEFSLIYREKKDGIKFQD 64
Query 58 YD 59
YD
Sbjct 65 YD 66
>gi|521960570|ref|WP_020472175.1| hypothetical protein [Zavarzinella formosa]
Length=2013
Score = 35.0 bits (79), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 0/61 (0%)
Query 18 YQAEPREVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEVAIDAMDKINQ 77
Y+ P ++II G +++ DG F +T K D +PE D T F+V D D +
Sbjct 748 YRLPPNRGAAQEIIHGTATTEADGSFGITFTAKPDLTIPEKDEPTFHFKVHADVTDTTGE 807
Query 78 S 78
+
Sbjct 808 T 808
Lambda K H a alpha
0.307 0.127 0.344 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 428991919341