bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 49,011,213 sequences; 17,563,301,199 total letters Query= Contig-25_CDS_annotation_glimmer3.pl_2_1 Length=681 Score E Sequences producing significant alignments: (Bits) Value gi|649557305|gb|KDS63784.1| capsid family protein 87.4 9e-16 gi|492501782|ref|WP_005867318.1| hypothetical protein 90.1 1e-15 gi|649569140|gb|KDS75238.1| capsid family protein 87.4 3e-15 gi|649555287|gb|KDS61824.1| capsid family protein 87.4 8e-15 gi|547920049|ref|WP_022322420.1| capsid protein VP1 87.0 1e-14 gi|494610271|ref|WP_007368517.1| capsid protein 84.7 5e-14 gi|647452987|ref|WP_025792807.1| hypothetical protein 77.0 2e-11 gi|565841287|ref|WP_023924568.1| hypothetical protein 67.4 2e-08 gi|496521299|ref|WP_009229582.1| capsid protein 62.0 8e-07 gi|494308783|ref|WP_007173938.1| hypothetical protein 61.6 1e-06 >gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4] gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B T(B) 6] Length=245 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 67/226 (30%), Positives = 110/226 (49%), Gaps = 17/226 (8%) Query 459 ATYGIRSATLP-ESPIFCGGMQSEIAFDEIVSNSATEE-EPLGTLAGRGVATMYKSGRGL 516 + +G+RS+ + P F GG ++ I+ E++ S+T+ P +AG G++ G Sbjct 34 SHFGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISA--GVNHGF 91 Query 517 KIKCTEPSMIMALGSITPRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaaw 575 E IM + SI PR Y QG K + + NMD F+ P +G QE+ EE Sbjct 92 TRYFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMD-FYFPEFAHLGEQEIKNEELYLN 150 Query 576 tteatDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGN 635 ++A ++ + G P + EY NE +G+F M AF LNR+++E + Sbjct 151 ESDAANE-----GTFGYTPRYAEYKYSQNEVHGDFRGNM--AFWHLNRIFKEKPNLN--- 200 Query 636 ASTYIDPTIYNSIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL 681 +T+++ N +FA + S +WVQ+ D+ A R+M P L Sbjct 201 -TTFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPKYGTPML 245 >gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis] gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis CL09T03C24] Length=538 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 126/264 (48%), Gaps = 17/264 (6%) Query 421 VDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSATLP-ESPIFCGGMQ 479 V+V + ++++ L + R A + Y + +G+RS+ + P F GG + Sbjct 289 VNVDELGVSINDLRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGR 348 Query 480 SEIAFDEIVSNSATEE-EPLGTLAGRGVATMYKSGRGLKIKCTEPSMIMALGSITPRIDY 538 + I+ E++ SAT+ P +AG G++ G K E I+ + SI PR Y Sbjct 349 TPISVSEVLQTSATDSTSPQANMAGHGISA--GVNHGFKRYFEEHGYIIGIMSIRPRTGY 406 Query 539 SQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawtteatDDHELVYQSLGKQPSWI 597 QG K + + NMD F+ P +G QE+ EE T A+++ + G P + Sbjct 407 QQGVPKDFRKFDNMD-FYFPEFAHLGEQEIKNEEVYLQQTPASNN-----GTFGYTPRYA 460 Query 598 EYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNASTYIDPTIYNSIFAESRLSSQ 657 EY +NE +G+F M AF LNR++ E+ + +T+++ N +FA + S Sbjct 461 EYKYSMNEVHGDFRGNM--AFWHLNRIFSESPNLN----TTFVECNPSNRVFATAETSDD 514 Query 658 NFWVQVAFDVTARRVMSAKQIPNL 681 +W+Q+ DV A R+M P L Sbjct 515 KYWIQLYQDVKALRLMPKYGTPML 538 >gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str. 3999B T(B) 6] Length=390 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/224 (30%), Positives = 109/224 (49%), Gaps = 17/224 (8%) Query 461 YGIRSATLP-ESPIFCGGMQSEIAFDEIVSNSATEE-EPLGTLAGRGVATMYKSGRGLKI 518 +G+RS+ + P F GG ++ I+ E++ S+T+ P +AG G++ G Sbjct 181 FGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISA--GVNHGFTR 238 Query 519 KCTEPSMIMALGSITPRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawtt 577 E IM + SI PR Y QG K + + NMD F+ P +G QE+ EE + Sbjct 239 YFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMD-FYFPEFAHLGEQEIKNEELYLNES 297 Query 578 eatDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNAS 637 +A ++ + G P + EY NE +G+F M AF LNR+++E + + Sbjct 298 DAANE-----GTFGYTPRYAEYKYSQNEVHGDFRGNM--AFWHLNRIFKEKPNLN----T 346 Query 638 TYIDPTIYNSIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL 681 T+++ N +FA + S +WVQ+ D+ A R+M P L Sbjct 347 TFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPKYGTPML 390 >gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4] gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4] gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4] gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B T(B) 6] Length=541 Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/224 (30%), Positives = 109/224 (49%), Gaps = 17/224 (8%) Query 461 YGIRSATLP-ESPIFCGGMQSEIAFDEIVSNSATEE-EPLGTLAGRGVATMYKSGRGLKI 518 +G+RS+ + P F GG ++ I+ E++ S+T+ P +AG G++ G Sbjct 332 FGVRSSDARLQRPQFLGGGRTPISVSEVLQTSSTDSTSPQANMAGHGISA--GVNHGFTR 389 Query 519 KCTEPSMIMALGSITPRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawtt 577 E IM + SI PR Y QG K + + NMD F+ P +G QE+ EE + Sbjct 390 YFEEHGYIMGIMSIRPRTGYQQGVPKDFRKFDNMD-FYFPEFAHLGEQEIKNEELYLNES 448 Query 578 eatDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNAS 637 +A ++ + G P + EY NE +G+F M AF LNR+++E + + Sbjct 449 DAANE-----GTFGYTPRYAEYKYSQNEVHGDFRGNM--AFWHLNRIFKEKPNLN----T 497 Query 638 TYIDPTIYNSIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL 681 T+++ N +FA + S +WVQ+ D+ A R+M P L Sbjct 498 TFVECNPSNRVFATAETSDDKYWVQIYQDIKALRLMPKYGTPML 541 >gi|547920049|ref|WP_022322420.1| capsid protein VP1 [Parabacteroides merdae CAG:48] gi|524592961|emb|CDD13573.1| capsid protein VP1 [Parabacteroides merdae CAG:48] Length=553 Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 121/269 (45%), Gaps = 17/269 (6%) Query 416 NSITAVDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSATLP-ESPIF 474 N V+V + + ++ L + R A Y + +G+RS+ + P F Sbjct 299 NGTLKVNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQF 358 Query 475 CGGMQSEIAFDEIVSNSATEE-EPLGTLAGRGVATMYKSGRGLKIKCTEPSMIMALGSIT 533 GG + I+ E++ S+T+E P +AG G++ +G K E I+ + SIT Sbjct 359 LGGGRMPISVSEVLQTSSTDETSPQANMAGHGISAGINNG--FKHYFEEHGYIIGIMSIT 416 Query 534 PRIDYSQG-NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawtteatDDHELVYQSLGK 592 PR Y QG + +T+ NMD F+ P + QE+ ++D + G Sbjct 417 PRSGYQQGVPRDFTKFDNMD-FYFPEFAHLSEQEI-----KNQELFVSEDAAYNNGTFGY 470 Query 593 QPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNASTYIDPTIYNSIFAES 652 P + EY +E +G+F L+F LNR++E+ + +T+++ N +FA S Sbjct 471 TPRYAEYKYHPSEAHGDFRGN--LSFWHLNRIFEDKPNLN----TTFVECKPSNRVFATS 524 Query 653 RLSSQNFWVQVAFDVTARRVMSAKQIPNL 681 FWVQ+ DV A R+M P L Sbjct 525 ETEDDKFWVQMYQDVKALRLMPKYGTPML 553 >gi|494610271|ref|WP_007368517.1| capsid protein [Prevotella multiformis] gi|324988543|gb|EGC20506.1| putative capsid protein (F protein) [Prevotella multiformis DSM 16608] Length=531 Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 134/314 (43%), Gaps = 55/314 (18%) Query 408 IDGTTGGINSITAVDVSD--GKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRS 465 + G + IN ++ + V+D +D ++ + N L+ Y + EA +G R Sbjct 233 VSGASTFINGVSVLSVNDLRAAFALDKMLEATRRANGLD--------YSSQIEAHFGFR- 283 Query 466 ATLPESPI----FCGGMQSEIAFDEIVSNS-----ATEEEPLGTLAGRGVATMYKSGRGL 516 +PES F GG + + E+V+ S A E LG L G+GV ++ S Sbjct 284 --VPESRAGDARFIGGFDNPVVISEVVNQSEFDRGADESPCLGDLGGKGVGSLNSSSIDF 341 Query 517 KIKCTEPSMIMALGSITPRIDYSQGNKW--WTRLQNMDDFHKPTLDAIGFQELIae---- 570 +K E +IM + S+ P+ +Y G + + R +DF +P +G+Q ++ Sbjct 342 DVK--EHGIIMCIYSVVPQTEY-NGTYFDPFNRKLRREDFFQPEFADLGYQPVVTSDLIS 398 Query 571 -------------eaaawtteatDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLA 617 + E + LG Q + EY T + +GEF +G+ L+ Sbjct 399 TYLDNPVPDGPEKQKRLAAGYPLSSIEANNRLLGWQVRYNEYKTSRDLVFGEFESGLSLS 458 Query 618 FMCLNRVYEENSDHTIGN----------ASTYIDPTIYNSIFAESRLSSQNFWVQVAFDV 667 + C R Y+ D G+ A Y++P+I N+IF S + + +F V FDV Sbjct 459 YWCSPR-YDFGFDGKAGDKKLVNSPWSPAHFYVNPSILNTIFLVSAVKADHFLVNSFFDV 517 Query 668 TARRVMSAKQIPNL 681 A R MS + L Sbjct 518 KAVRPMSVSGLAGL 531 >gi|647452987|ref|WP_025792807.1| hypothetical protein [Prevotella histicola] Length=584 Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 84/310 (27%), Positives = 134/310 (43%), Gaps = 51/310 (16%) Query 414 GINSITAVDVSDGKLTMDALILQKKIFNMLNRVAITDG-TYQAWREATYGIRSATLPESP 472 G S+ + VS +++ L + ML +G Y + EA +G + +PES Sbjct 284 GSVSLDSGTVSPSSFSVNDLRAAFALDKMLEATRRANGLDYASQIEAHFGFK---VPESR 340 Query 473 I----FCGGMQSEIAFDEIVS---NSATE--EEPLGTLAGRGVATMYKSGRGLKIKCTEP 523 F GG + I E+VS N+A++ +G L G+G+ +M S ++ TE Sbjct 341 ANDARFLGGFDNSIVVSEVVSTNGNAASDGSHASIGDLGGKGIGSM--SSGTIEFDSTEH 398 Query 524 SMIMALGSITPRIDYSQG-----NKWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawtte 578 +IM + S+ P+ +Y+ N+ TR Q F++P +G+Q LI + T Sbjct 399 GIIMCIYSVAPQSEYNASYLDPFNRKLTREQ----FYQPEFADLGYQALIGSDLICSTLG 454 Query 579 atD------DHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNR--------- 623 + D EL LG Q + EY T + +G+F +G L++ C R Sbjct 455 MNEKQAGFSDIELNNNLLGYQVRYNEYKTARDLVFGDFESGKSLSYWCTPRFDFGYGDTE 514 Query 624 --VYEENSD----HTIGNAST------YIDPTIYNSIFAESRLSSQNFWVQVAFDVTARR 671 + EN GN S YI+P + N IF S + + +F V DV A R Sbjct 515 KKIAPENKGGADYRKKGNRSHWSSRNFYINPNLVNPIFLTSAVQADHFIVNSFLDVKAVR 574 Query 672 VMSAKQIPNL 681 MS + +L Sbjct 575 PMSVTGLSSL 584 >gi|565841287|ref|WP_023924568.1| hypothetical protein [Prevotella nigrescens] gi|564729907|gb|ETD29851.1| hypothetical protein HMPREF1173_00033 [Prevotella nigrescens CC14M] Length=656 Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 134/314 (43%), Gaps = 38/314 (12%) Query 388 GLAVKTYLSDRFNN---WLNTEWIDGTTGGINSITAVDVSDGKLTMDALILQKKIFNMLN 444 G A D NN L + +D + G N+I+ + +D + A+ +K ML Sbjct 355 GFATTEVKRDVVNNRGSQLEIKSMDAGSLGSNNISYISPND----IRAMFALEK---MLE 407 Query 445 RVAITDG-TYQAWREATYGIRSATLPES----PIFCGGMQSEIAFDEIVSNS-------A 492 R +G Y A +G + +PES F GG ++I+ E+V+ S A Sbjct 408 RTRAANGLDYSNQIAAHFGFK---VPESRKNCASFIGGFDNQISISEVVTTSNGSVDGTA 464 Query 493 TEEEPLGTLAGRGVATMYKSGRGLKIKCTEPSMIMALGSITPRIDY-SQGNKWWTRLQNM 551 + +G + G+G+ M SG + E +IM + SI P++DY ++ + R + Sbjct 465 STGSVVGQVFGKGIGAM-NSGH-ISYDVKEHGLIMCIYSIAPQVDYDARELDPFNRKFSR 522 Query 552 DDFHKPTLDAIGFQELIaeeaaawtteatDDHELVYQS-LGKQPSWIEYTTDVNETYGEF 610 +D+ +P + +G Q +I + A D + + LG ++EY T + +GEF Sbjct 523 EDYFQPEFENLGMQPVIQSDLCLCINSAKSDSSDQHNNVLGYSARYLEYKTARDIIFGEF 582 Query 611 AAGMPLAFMCLNRVYEENSDHTIGNAS---TYIDPTIYNSIFA---ESRLSSQNFWVQVA 664 +G L+ + N G S +DP + IFA +S+ F V Sbjct 583 MSGGSLSAWATPK---NNYTFEFGKLSLPDLLVDPKVLEPIFAVKYNGSMSTDQFLVNSY 639 Query 665 FDVTARRVMSAKQI 678 FDV A R M + Sbjct 640 FDVKAIRPMQVNDM 653 >gi|496521299|ref|WP_009229582.1| capsid protein [Prevotella sp. oral taxon 317] gi|288330570|gb|EFC69154.1| putative capsid protein (F protein) [Prevotella sp. oral taxon 317 str. F0108] Length=541 Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 96/432 (22%), Positives = 165/432 (38%), Gaps = 77/432 (18%) Query 255 PSQKINKLTKLGNAFIFERTDPEAMGLKKPDNPKRATNIYVY-----QVKKPIYLAYNMN 309 P+ K+ + K F+ ERTD + G +N R ++ Y K P+ L Y N Sbjct 117 PNVKLADMYK----FVRERTDKDIFGYPHSNNSCRLMDLLGYGKPITSSKTPVPLLYTGN 172 Query 310 IAGNNYLTMPDNKKIKLTPFPLKNIDQERNKILAAPSTSAYVVEGATMPYGAATKTIGLP 369 + N + + NK D RN ++ ++ K +P Sbjct 173 V--NLFRLLAYNKIYS---------DYYRNTTYEGVDVYSFNID--------HKKGTFVP 213 Query 370 SYDRREKYNSSNAWYSQAGLAVKTYL---------SDRFNNWLNTEWIDGTTGGINSITA 420 + D +KY N Y A L T L SD F++ L G+ G + Sbjct 214 TADEFKKY--LNLHYRNAPLDFYTNLRPTPLFTIGSDSFSSVLQLSDPTGSAG-----FS 266 Query 421 VDVSDGKLTM---DAL----ILQKKIFNMLNRVAITDG-TYQAWREATYGIRSATLPESP 472 D + KL M D L I + L +++ G TY EA +G+ + + Sbjct 267 ADGNSAKLNMASPDVLNVSAIRSAFALDKLLSISMRAGKTYAEQIEAHFGVTVSEGRDGQ 326 Query 473 IF-CGGMQSEIAFDEIVSNSATEEEP------------LGTLAGRGVATMYKSGRGLKIK 519 ++ GG S + ++ S T LG + G+G + Y ++ Sbjct 327 VYYLGGFDSNVQVGDVTQTSGTTNPNVSEVGNAKLAGYLGKITGKGTGSGYGE---IQFD 383 Query 520 CTEPSMIMALGSITPRIDYSQGN-KWWTRLQNMDDFHKPTLDAIGFQELIaeeaaawtte 578 EP ++M + S+ P + Y + Q D+ P + +G Q ++ + + Sbjct 384 AKEPGVLMCIYSVVPAMQYDCMRLDPFVAKQTRGDYFIPEFENLGMQPIVPAFVSLNRAK 443 Query 579 atDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNAST 638 S G QP + EY T + +G+FA G PL++ + R ++ +T A+ Sbjct 444 D--------NSYGWQPRYSEYKTAFDINHGQFANGEPLSYWSIARARGSDTLNTFNVAAL 495 Query 639 YIDPTIYNSIFA 650 I+P +S+FA Sbjct 496 KINPHWLDSVFA 507 >gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis] gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM 17361] Length=553 Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/253 (27%), Positives = 109/253 (43%), Gaps = 35/253 (14%) Query 415 INSITAVDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSATLPESPI- 473 +N D S+G ++ +L + +L+ T+Q A YG+ +P+S Sbjct 283 VNFGVDTDSSEGDFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVE---IPDSRDG 339 Query 474 ---FCGGMQSEIAFDEIVSNS---ATEEEP----LGTLAGRGVATMYKSGRG-LKIKCTE 522 + GG S++ ++ S ATE +P LG +AG+G SGRG + E Sbjct 340 RVNYLGGFDSDMQVSDVTQTSGTTATEYKPEAGYLGRVAGKGTG----SGRGRIVFDAKE 395 Query 523 PSMIMALGSITPRIDYSQGNKWWTRLQNMDD------FHKPTLDAIGFQELIaeeaaawt 576 ++M + S+ P+I Y TRL M D + P + +G Q L + + Sbjct 396 HGVLMCIYSLVPQIQYD-----CTRLDPMVDKLDRFDYFTPEFENLGMQPL--NSSYISS 448 Query 577 teatDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNA 636 TD V LG QP + EY T ++ +G+FA L+ ++R + + A Sbjct 449 FCTTDPKNPV---LGYQPRYSEYKTALDVNHGQFAQSDALSSWSVSRFRRWTTFPQLEIA 505 Query 637 STYIDPTIYNSIF 649 IDP NSIF Sbjct 506 DFKIDPGCLNSIF 518 Lambda K H a alpha 0.316 0.133 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5242412234784