bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_9
Length=263
Score E
Sequences producing significant alignments: (Bits) Value
gi|492501782|ref|WP_005867318.1| hypothetical protein 80.5 6e-14
gi|547312923|ref|WP_022044635.1| putative uncharacterized protein 75.9 1e-12
gi|547920049|ref|WP_022322420.1| capsid protein VP1 75.5 3e-12
gi|649557305|gb|KDS63784.1| capsid family protein 72.8 4e-12
gi|649569140|gb|KDS75238.1| capsid family protein 72.4 2e-11
gi|649555287|gb|KDS61824.1| capsid family protein 72.4 3e-11
gi|599087961|gb|AHN52906.1| major capsid protein 63.9 4e-09
gi|599087475|gb|AHN52663.1| major capsid protein 63.5 6e-09
gi|599088027|gb|AHN52939.1| major capsid protein 63.5 7e-09
gi|599088021|gb|AHN52936.1| major capsid protein 62.4 2e-08
>gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis]
gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis
CL09T03C24]
Length=538
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 115/264 (44%), Gaps = 15/264 (6%)
Query 1 VDVTDGKLSMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVS 60
V+V + +S++ L + + + R A SG Y + + + + + R + P F GG
Sbjct 289 VNVDELGVSINDLRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGR 348
Query 61 QEIVFQEVISNSASQE-EPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDY 119
I EV+ SA+ P +AG G++ G G + E YI+ I SI PR Y
Sbjct 349 TPISVSEVLQTSATDSTSPQANMAGHGISAGVNHG--FKRYFEEHGYIIGIMSIRPRTGY 406
Query 120 GQGNTWDTYLETMDDWHKPALDGIGYQDSLNGERAWWTDHIASNGGSLTKTAAGKTVAWI 179
QG D D++ P +G Q+ + E + ASN G+ G T +
Sbjct 407 QQGVPKDFRKFDNMDFYFPEFAHLGEQE-IKNEEVYLQQTPASNNGTF-----GYTPRYA 460
Query 180 NYMTNVNRTFGNFAPEMPESFMVLNRNYSMNNNGQIEDLTTYIDPVKFNYIFADTNLDAM 239
Y ++N G+F M +F LNR +S + N TT+++ N +FA
Sbjct 461 EYKYSMNEVHGDFRGNM--AFWHLNRIFSESPNLN----TTFVECNPSNRVFATAETSDD 514
Query 240 NFWVQTKFDIKVRRLISAKQIPNL 263
+W+Q D+K RL+ P L
Sbjct 515 KYWIQLYQDVKALRLMPKYGTPML 538
>gi|547312923|ref|WP_022044635.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
gi|524208404|emb|CCZ76639.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
Length=338
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 119/294 (40%), Gaps = 45/294 (15%)
Query 7 KLSMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQ 66
+++ L L K+ N+++R+ +SGG D T++ + P F G V+Q
Sbjct 51 SVAVPELRLRTKIQNWMDRLFVSGGRVGDVFRTLWGTKSSAIYVNKPDFLG------VWQ 104
Query 67 EVISNSASQEEPLGTLAGRGVTTGRQKG---------GH--IRIKVTEPCYIMCICSITP 115
I+ S + G+ +G G+ GH I EP M I + P
Sbjct 105 ASINPSNVRAMANGSASGEDANLGQLAACVDRYCDFSGHSGIDYYAKEPGTFMLITMLVP 164
Query 116 RIDYGQGNTWDTYLETMDDWHKPALDGIGYQ----------------DSLNGERAWWTDH 159
Y QG D + D P L+GIG+Q L+ E + W H
Sbjct 165 EPAYSQGLHPDLASISFGDDFNPELNGIGFQLVPRHRFSMMPRGFNFTGLDQEASPWFGH 224
Query 160 IASNGGSLTK---TAAGKTVAWINYMTNVNRTFGNFAPEMPESFMVLNRNYSM----NNN 212
+ G L + G+ VAW T+ +R G+FA + VL R ++ +
Sbjct 225 TGT--GVLVDPNMVSVGEEVAWSWLRTDYSRLHGDFAQNGNYQYWVLTRRFTTYFPDDGT 282
Query 213 GQIED---LTTYIDPVKFNYIFADTNLDAMNFWVQTKFDIKVRRLISAKQIPNL 263
G +D TYI+P+ + Y+F D L A NF FD+ V +SA +P L
Sbjct 283 GFYQDGEYTGTYINPLDWQYVFVDQTLMAGNFAYYGTFDLNVTSSLSANYMPYL 336
>gi|547920049|ref|WP_022322420.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
gi|524592961|emb|CDD13573.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
Length=553
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 118/265 (45%), Gaps = 17/265 (6%)
Query 1 VDVTDGKLSMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVS 60
V+V + ++++ L + + + R A G Y + + + + + R + P F GG
Sbjct 304 VNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGR 363
Query 61 QEIVFQEVISNSASQE-EPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDY 119
I EV+ S++ E P +AG G++ G G + E YI+ I SITPR Y
Sbjct 364 MPISVSEVLQTSSTDETSPQANMAGHGISAGINNG--FKHYFEEHGYIIGIMSITPRSGY 421
Query 120 GQGNTWD-TYLETMDDWHKPALDGIGYQDSLNGERAWWTDHIASNGGSLTKTAAGKTVAW 178
QG D T + MD ++ P + Q+ N E + ++ A N G+ G T +
Sbjct 422 QQGVPRDFTKFDNMD-FYFPEFAHLSEQEIKNQE-LFVSEDAAYNNGTF-----GYTPRY 474
Query 179 INYMTNVNRTFGNFAPEMPESFMVLNRNYSMNNNGQIEDLTTYIDPVKFNYIFADTNLDA 238
Y + + G+F + SF LNR + N TT+++ N +FA + +
Sbjct 475 AEYKYHPSEAHGDFRGNL--SFWHLNRIFEDKPNLN----TTFVECKPSNRVFATSETED 528
Query 239 MNFWVQTKFDIKVRRLISAKQIPNL 263
FWVQ D+K RL+ P L
Sbjct 529 DKFWVQMYQDVKALRLMPKYGTPML 553
>gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=245
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 15/257 (6%)
Query 8 LSMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQE 67
++++ + + + + R A SG Y + + + + + R + P F GG I E
Sbjct 3 VNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSE 62
Query 68 VISNSASQE-EPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDYGQGNTWD 126
V+ S++ P +AG G++ G G E YIM I SI PR Y QG D
Sbjct 63 VLQTSSTDSTSPQANMAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKD 120
Query 127 TYLETMDDWHKPALDGIGYQDSLNGERAWWTDHIASNGGSLTKTAAGKTVAWINYMTNVN 186
D++ P +G Q+ + E + + A+N G+ G T + Y + N
Sbjct 121 FRKFDNMDFYFPEFAHLGEQE-IKNEELYLNESDAANEGTF-----GYTPRYAEYKYSQN 174
Query 187 RTFGNFAPEMPESFMVLNRNYSMNNNGQIEDLTTYIDPVKFNYIFADTNLDAMNFWVQTK 246
G+F M +F LNR + N TT+++ N +FA +WVQ
Sbjct 175 EVHGDFRGNM--AFWHLNRIFKEKPNLN----TTFVECNPSNRVFATAETSDDKYWVQIY 228
Query 247 FDIKVRRLISAKQIPNL 263
DIK RL+ P L
Sbjct 229 QDIKALRLMPKYGTPML 245
>gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str.
3999B T(B) 6]
Length=390
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 15/257 (6%)
Query 8 LSMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQE 67
++++ + + + + R A SG Y + + + + + R + P F GG I E
Sbjct 148 VNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSE 207
Query 68 VISNSASQE-EPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDYGQGNTWD 126
V+ S++ P +AG G++ G G E YIM I SI PR Y QG D
Sbjct 208 VLQTSSTDSTSPQANMAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKD 265
Query 127 TYLETMDDWHKPALDGIGYQDSLNGERAWWTDHIASNGGSLTKTAAGKTVAWINYMTNVN 186
D++ P +G Q+ + E + + A+N G+ G T + Y + N
Sbjct 266 FRKFDNMDFYFPEFAHLGEQE-IKNEELYLNESDAANEGTF-----GYTPRYAEYKYSQN 319
Query 187 RTFGNFAPEMPESFMVLNRNYSMNNNGQIEDLTTYIDPVKFNYIFADTNLDAMNFWVQTK 246
G+F M +F LNR + N TT+++ N +FA +WVQ
Sbjct 320 EVHGDFRGNM--AFWHLNRIFKEKPNLN----TTFVECNPSNRVFATAETSDDKYWVQIY 373
Query 247 FDIKVRRLISAKQIPNL 263
DIK RL+ P L
Sbjct 374 QDIKALRLMPKYGTPML 390
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 15/257 (6%)
Query 8 LSMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQE 67
++++ + + + + R A SG Y + + + + + R + P F GG I E
Sbjct 299 VNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSE 358
Query 68 VISNSASQE-EPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDYGQGNTWD 126
V+ S++ P +AG G++ G G E YIM I SI PR Y QG D
Sbjct 359 VLQTSSTDSTSPQANMAGHGISAGVNHG--FTRYFEEHGYIMGIMSIRPRTGYQQGVPKD 416
Query 127 TYLETMDDWHKPALDGIGYQDSLNGERAWWTDHIASNGGSLTKTAAGKTVAWINYMTNVN 186
D++ P +G Q+ + E + + A+N G+ G T + Y + N
Sbjct 417 FRKFDNMDFYFPEFAHLGEQE-IKNEELYLNESDAANEGTF-----GYTPRYAEYKYSQN 470
Query 187 RTFGNFAPEMPESFMVLNRNYSMNNNGQIEDLTTYIDPVKFNYIFADTNLDAMNFWVQTK 246
G+F M +F LNR + N TT+++ N +FA +WVQ
Sbjct 471 EVHGDFRGNM--AFWHLNRIFKEKPNLN----TTFVECNPSNRVFATAETSDDKYWVQIY 524
Query 247 FDIKVRRLISAKQIPNL 263
DIK RL+ P L
Sbjct 525 QDIKALRLMPKYGTPML 541
>gi|599087961|gb|AHN52906.1| major capsid protein, partial [uncultured Gokushovirinae]
Length=210
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query 9 SMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQEV 68
+++ L A ++ L R A SG Y + ++ + G N+M+ P F GG S I V
Sbjct 68 TINQLRQAFQIQKLLERDARSGTRYSEIVKAHF-GVNFMDVTYRPEFLGGTSTPINVTSV 126
Query 69 ISNSASQEEPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDYGQGNTWDTY 128
S S P GTLA G T GG TE C +M I S+ + Y QG
Sbjct 127 PQTSESGTTPQGTLAAFGTAT--INGGGFTKSFTEHCIVMGIASVRADLTYQQGLNRMFS 184
Query 129 LETMDDWHKPALDGIGYQDSLNGE 152
T D++ PAL IG Q LN E
Sbjct 185 RSTRYDFYFPALAHIGEQSVLNKE 208
>gi|599087475|gb|AHN52663.1| major capsid protein, partial [uncultured Gokushovirinae]
Length=210
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query 9 SMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQEV 68
+++ L A ++ L R A SG Y + ++ + G N+M+ P F GG S I V
Sbjct 68 TINQLRQAFQIQKLLERDARSGTRYSEIVKAHF-GVNFMDVTYRPEFLGGTSTPINVTSV 126
Query 69 ISNSASQEEPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDYGQGNTWDTY 128
S S P GTLA G T GG TE C +M I S+ + Y QG
Sbjct 127 PQTSESGTTPQGTLAAFGTAT--INGGGFTKSFTEHCILMGIASVRADLTYQQGLNRMFS 184
Query 129 LETMDDWHKPALDGIGYQDSLNGE 152
T D++ PAL IG Q LN E
Sbjct 185 RSTRYDFYFPALAHIGEQSVLNKE 208
>gi|599088027|gb|AHN52939.1| major capsid protein, partial [uncultured Gokushovirinae]
Length=219
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query 9 SMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQEV 68
+++ L A ++ L R A SG Y + ++ + G N+M+ P F GG S I V
Sbjct 77 TINQLRQAFQIQKLLERDARSGTRYAEIVKAHF-GVNFMDVTYRPEFLGGTSTPINVTSV 135
Query 69 ISNSASQEEPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDYGQGNTWDTY 128
S S P GTLA G T GG TE C +M I S+ + Y QG
Sbjct 136 PQTSESGTTPQGTLAAFGTAT--VNGGGFTKSFTEHCIVMGIASVRADLTYQQGLNRMFS 193
Query 129 LETMDDWHKPALDGIGYQDSLNGE 152
T D++ PAL IG Q LN E
Sbjct 194 RSTRYDFYFPALAHIGEQAVLNKE 217
>gi|599088021|gb|AHN52936.1| major capsid protein, partial [uncultured Gokushovirinae]
Length=220
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query 9 SMDALNLAQKVYNFLNRIAISGGTYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQEV 68
+++ L A ++ L R A SG Y + ++ + G N+M+ P F GG S + V
Sbjct 78 TINQLRQAFQIQKLLERDARSGTRYSEIVKAHF-GVNFMDVTYRPEFLGGSSTPVNVTSV 136
Query 69 ISNSASQEEPLGTLAGRGVTTGRQKGGHIRIKVTEPCYIMCICSITPRIDYGQGNTWDTY 128
S S P GTLA G T GG TE C +M I S+ + Y QG
Sbjct 137 PQTSESGTTPQGTLAAFGTAT--INGGGFTKSFTEHCIVMGIASVRADLTYQQGLNRMFS 194
Query 129 LETMDDWHKPALDGIGYQDSLNGE 152
T D++ PAL IG Q LN E
Sbjct 195 RSTRYDFYFPALAHIGEQSVLNKE 218
Lambda K H a alpha
0.318 0.135 0.419 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1233887687052