bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-18_CDS_annotation_glimmer3.pl_2_6
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094430|emb|CDL65810.1| unnamed protein product 104 8e-23
gi|575096057|emb|CDL66940.1| unnamed protein product 62.0 7e-08
gi|9791177|ref|NP_063896.1| capsid protein VP2-related protein 59.3 2e-07
gi|470147451|ref|XP_004309317.1| PREDICTED: minor spike protein ... 58.5 2e-07
gi|17402852|ref|NP_510874.1| capsid protein VP2-related protein 58.9 2e-07
gi|9634952|ref|NP_054650.1| structural protein 58.9 3e-07
gi|47566144|ref|YP_022482.1| structural protein 58.9 3e-07
gi|77020116|ref|YP_338241.1| putative minor spike 58.9 3e-07
gi|575094416|emb|CDL65791.1| unnamed protein product 57.0 5e-06
gi|575094545|emb|CDL65905.1| unnamed protein product 56.6 6e-06
>gi|575094430|emb|CDL65810.1| unnamed protein product [uncultured bacterium]
Length=274
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/76 (66%), Positives = 60/76 (79%), Gaps = 0/76 (0%)
Query 89 AQQKYNQKSMLQQMGYNTMQAITQGIYNHIENTAAMNYNSAEALANREFQERMSNTAYQR 148
AQ YN KSML MGYNT+ AITQGIYN I AAM YNSA+A+ +++E MSNT+YQR
Sbjct 86 AQGNYNFKSMLTSMGYNTLGAITQGIYNSISQGAAMQYNSAQAMRQMKWEEHMSNTSYQR 145
Query 149 TVEDMKKAGLNPILAF 164
+EDM+KAGLNPILA+
Sbjct 146 AMEDMRKAGLNPILAY 161
>gi|575096057|emb|CDL66940.1| unnamed protein product [uncultured bacterium]
Length=275
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)
Query 104 YNTMQAITQGIYNHIENTAAMNYNSAEALANREFQERMSNTAYQRTVEDMKKAGLNPILA 163
+N QA Q + +N AM +NS EA NR++QE MSNTA+QR V+D+ AGLNP+L+
Sbjct 38 WNAEQAEIQRDWQEAQNAKAMQFNSMEAAKNRKWQEMMSNTAHQREVKDLMAAGLNPVLS 97
>gi|9791177|ref|NP_063896.1| capsid protein VP2-related protein [Chlamydia pneumoniae phage
CPAR39]
gi|7190962|gb|AAF39722.1| capsid protein VP2-related protein [Chlamydia pneumoniae phage
CPAR39]
Length=186
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 103 GYNTMQAITQGIYNHIENTAAMNYNSAEALANRE---FQERMSNTAYQRTVEDMKKAGLN 159
G + + I G+ ++ A N+ RE FQERMSNTAYQR +EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 160 PILAF 164
P+LAF
Sbjct 77 PMLAF 81
>gi|470147451|ref|XP_004309317.1| PREDICTED: minor spike protein H-like, partial [Fragaria vesca
subsp. vesca]
Length=139
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%), Gaps = 0/36 (0%)
Query 129 AEALANREFQERMSNTAYQRTVEDMKKAGLNPILAF 164
AEA NREFQER+SN+AYQR V D+ AGLNP+LA+
Sbjct 24 AEAQRNREFQERLSNSAYQRQVADLSSAGLNPMLAY 59
>gi|17402852|ref|NP_510874.1| capsid protein VP2-related protein [Guinea pig Chlamydia phage]
Length=186
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 103 GYNTMQAITQGIYNHIENTAAMNYNSAEALANRE---FQERMSNTAYQRTVEDMKKAGLN 159
G + + I G+ ++ A N+ RE FQERMSNTAYQR +EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 160 PILAF 164
P+LAF
Sbjct 77 PMLAF 81
>gi|9634952|ref|NP_054650.1| structural protein [Chlamydia phage 2]
gi|7406592|emb|CAB85592.1| structural protein [Chlamydia phage 2]
Length=186
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 103 GYNTMQAITQGIYNHIENTAAMNYNSAEALANRE---FQERMSNTAYQRTVEDMKKAGLN 159
G + + I G+ ++ A N+ RE FQERMSNTAYQR +EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 160 PILAF 164
P+LAF
Sbjct 77 PMLAF 81
>gi|47566144|ref|YP_022482.1| structural protein [Chlamydia phage 3]
gi|47522479|emb|CAD79480.1| structural protein [Chlamydia phage 3]
Length=186
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 103 GYNTMQAITQGIYNHIENTAAMNYNSAEALANRE---FQERMSNTAYQRTVEDMKKAGLN 159
G + + I G+ ++ A N+ RE FQERMSNTAYQR +EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 160 PILAF 164
P+LAF
Sbjct 77 PMLAF 81
>gi|77020116|ref|YP_338241.1| putative minor spike [Chlamydia phage 4]
gi|59940015|gb|AAX12544.1| putative minor spike [Chlamydia phage 4]
Length=186
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 103 GYNTMQAITQGIYNHIENTAAMNYNSAEALANRE---FQERMSNTAYQRTVEDMKKAGLN 159
G + + I G+ ++ A N+ RE FQERMSNTAYQR +EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYL---GAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 160 PILAF 164
P+LAF
Sbjct 77 PMLAF 81
>gi|575094416|emb|CDL65791.1| unnamed protein product [uncultured bacterium]
Length=311
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (57%), Gaps = 5/76 (7%)
Query 88 IAQQKYNQKSMLQQMGYNTMQAITQGIYNHIENTAAMNYNSAEALANREFQERMSNTAYQ 147
+ Q +N +ML NT+ + + N T+A YN EA A R + + M TAYQ
Sbjct 114 LQQSWWNNAAML-----NTISNVVSNLSNAASQTSAQRYNREEAQAERSWAQSMRQTAYQ 168
Query 148 RTVEDMKKAGLNPILA 163
TV+D+K AGLNPILA
Sbjct 169 DTVKDLKAAGLNPILA 184
>gi|575094545|emb|CDL65905.1| unnamed protein product [uncultured bacterium]
Length=325
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (67%), Gaps = 0/60 (0%)
Query 104 YNTMQAITQGIYNHIENTAAMNYNSAEALANREFQERMSNTAYQRTVEDMKKAGLNPILA 163
+N QA + +N AM ++SAEA NR++Q MSNTA+QR V D+K AGLNP+L+
Sbjct 37 FNASQAAANRNWQQQQNNIAMQFSSAEAAKNRDWQSYMSNTAHQREVADLKAAGLNPVLS 96
Lambda K H a alpha
0.310 0.125 0.355 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1540334286948