bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-12_CDS_annotation_glimmer3.pl_2_6

Length=50
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|547479507|ref|WP_022097490.1|  putative uncharacterized protein    33.1    3.9
gi|663179743|ref|WP_030218323.1|  DNA-binding protein                 33.1    5.9
gi|498158387|ref|WP_010472543.1|  DNA-binding protein                 31.2    7.3
gi|654239386|ref|WP_027755086.1|  XRE family transcriptional regu...  32.7    9.9


>gi|547479507|ref|WP_022097490.1| putative uncharacterized protein [Eubacterium eligens CAG:72]
 gi|524278470|emb|CDA41448.1| putative uncharacterized protein [Eubacterium eligens CAG:72]
Length=148

 Score = 33.1 bits (74),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  3    KQFYLVLLHYGSEVSSKVVISLDRLDSFLSRGYTVEFVQPIRVLSDEL  50
            + + + L  YG++ + +V+   DR+D+ +  G++ E VQ + V++D++
Sbjct  87   RSWNVSLTDYGAQKADEVIRIFDRIDNVIYNGFSEEEVQTLSVMADKV  134


>gi|663179743|ref|WP_030218323.1| DNA-binding protein [Streptomyces griseoluteus]
Length=235

 Score = 33.1 bits (74),  Expect = 5.9, Method: Composition-based stats.
 Identities = 15/40 (38%), Positives = 23/40 (58%), Gaps = 0/40 (0%)

Query  10   LHYGSEVSSKVVISLDRLDSFLSRGYTVEFVQPIRVLSDE  49
            L   S   ++V    DR+D   S+G++V  V P+R +SDE
Sbjct  146  LARASASGAEVAFEEDRMDEAFSQGWSVLVVGPVRTVSDE  185


>gi|498158387|ref|WP_010472543.1| DNA-binding protein, partial [Streptomyces somaliensis]
Length=85

 Score = 31.2 bits (69),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (56%), Gaps = 0/36 (0%)

Query  13  GSEVSSKVVISLDRLDSFLSRGYTVEFVQPIRVLSD  48
           G     +V   +D +D   SRG++V  V P RV++D
Sbjct  2   GRAAGREVAFEVDHIDEAFSRGWSVLLVGPARVVTD  37


>gi|654239386|ref|WP_027755086.1| XRE family transcriptional regulator [Streptomyces sp. CNH099]
Length=309

 Score = 32.7 bits (73),  Expect = 9.9, Method: Composition-based stats.
 Identities = 14/36 (39%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  13   GSEVSSKVVISLDRLDSFLSRGYTVEFVQPIRVLSD  48
             + V S+V   +D +D  +SRG++V  V P RV++D
Sbjct  232  AAAVGSEVAFEVDHVDEAMSRGWSVLAVGPARVVTD  267



Lambda      K        H        a         alpha
   0.323    0.140    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443773169100