bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_2
Length=107
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_21_005_Microviridae_AG014_hypothetical.pr... 221 6e-77
Alpavirinae_Human_feces_C_010_Microviridae_AG0200_hypothetical.... 218 1e-75
Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1 21.9 1.8
Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1 20.4 5.2
Pichovirinae_Pavin_723_Microviridae_AG0326_hypothetical.protein... 20.0 7.9
> Alpavirinae_Human_gut_21_005_Microviridae_AG014_hypothetical.protein
Length=107
Score = 221 bits (562), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 106/107 (99%), Positives = 106/107 (99%), Gaps = 0/107 (0%)
Query 1 MARNTKPDYKCVECNFDVQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA 60
MARNTKPDYKCVECNFDVQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA
Sbjct 1 MARNTKPDYKCVECNFDVQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA 60
Query 61 SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN 107
SWNIEPQF RDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN
Sbjct 61 SWNIEPQFCRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN 107
> Alpavirinae_Human_feces_C_010_Microviridae_AG0200_hypothetical.protein
Length=127
Score = 218 bits (554), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 103/107 (96%), Positives = 104/107 (97%), Gaps = 0/107 (0%)
Query 1 MARNTKPDYKCVECNFDVQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA 60
MARNTKPDYK V C FD+QKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA
Sbjct 21 MARNTKPDYKSVTCEFDIQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA 80
Query 61 SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN 107
SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN
Sbjct 81 SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN 127
> Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1
Length=780
Score = 21.9 bits (45), Expect = 1.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 27 PNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA 60
P +GLT + + G V+ +N +D +G+A
Sbjct 456 PLVGLTTYESVSLNDAGHTVTTVNTAIVDEDGNA 489
> Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1
Length=647
Score = 20.4 bits (41), Expect = 5.2, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query 20 KDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDASWN 63
KD P+ PQ E +P P +V V+ WN
Sbjct 286 KDTTAASPDFTKMPQMYPEAMNFNVPAYPYDVQEPKVD----WN 325
> Pichovirinae_Pavin_723_Microviridae_AG0326_hypothetical.protein.BACEGG.02723
Length=266
Score = 20.0 bits (40), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 7/16 (44%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 28 NLGLTPQQVAEMAKRG 43
NLGL P ++++ K G
Sbjct 243 NLGLNPNIISDLLKIG 258
Lambda K H a alpha
0.317 0.131 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5733300