bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-35_CDS_annotation_glimmer3.pl_2_1
Length=96
Score E
Sequences producing significant alignments: (Bits) Value
Pichovirinae_JCVI_003_Microviridae_AG0346_hypothetical.protein.... 22.7 0.65
Alpavirinae_Human_gut_22_017_Microviridae_AG0396_hypothetical.p... 22.3 0.95
Alpavirinae_Human_gut_33_017_Microviridae_AG0156_putative.VP2 21.9 1.2
Gokush_Human_gut_33_003_Microviridae_AG062_putative.VP2 21.2 2.4
Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1 20.8 3.7
Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1 20.4 4.2
Pichovirinae_59_Coral_002_Microviridae_AG0342_hypothetical.prot... 20.0 5.7
Alpavirinae_Human_feces_A_021_Microviridae_AG079_hypothetical.p... 20.0 6.6
> Pichovirinae_JCVI_003_Microviridae_AG0346_hypothetical.protein.BACEGG.02723
Length=252
Score = 22.7 bits (47), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (49%), Gaps = 0/35 (0%)
Query 4 ESWSQSDWYNAAQSWNQMLSSTGMTPLGLQETLSD 38
E W ++ YN+ + Q L G+ P TL+D
Sbjct 50 EDWQRTTDYNSPEQQMQRLKEAGLNPKLAYGTLAD 84
> Alpavirinae_Human_gut_22_017_Microviridae_AG0396_hypothetical.protein.BACPLE
Length=386
Score = 22.3 bits (46), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 6 WSQSDWYNAAQSWNQMLSSTGMTP 29
W++ + YN A + Q L G+ P
Sbjct 61 WNKENAYNTASAQRQRLEEAGLNP 84
> Alpavirinae_Human_gut_33_017_Microviridae_AG0156_putative.VP2
Length=353
Score = 21.9 bits (45), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 6 WSQSDWYNAAQSWNQMLSSTGMTP 29
W++ + YN A + Q L G+ P
Sbjct 61 WNKENTYNTASAQRQRLEEAGLNP 84
> Gokush_Human_gut_33_003_Microviridae_AG062_putative.VP2
Length=295
Score = 21.2 bits (43), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 0/32 (0%)
Query 5 SWSQSDWYNAAQSWNQMLSSTGMTPLGLQETL 36
S S + WY A++ LS++ TP L + L
Sbjct 212 SESNAQWYQLAEAVGSQLSTSHSTPKALVDDL 243
> Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1
Length=651
Score = 20.8 bits (42), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 7/21 (33%), Positives = 13/21 (62%), Gaps = 0/21 (0%)
Query 3 YESWSQSDWYNAAQSWNQMLS 23
Y++W +DW + A N++ S
Sbjct 363 YQNWINTDWIDGANGINEISS 383
> Pichovirinae_59_Coral_002_Microviridae_AG0339_putative.VP1
Length=522
Score = 20.4 bits (41), Expect = 4.2, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query 1 LRYESWSQSDWYNAAQSWNQMLSSTGMTPLG 31
+R +W Q D++ +A W Q PLG
Sbjct 178 MRKRAW-QHDYFTSALPWTQR-GPEATIPLG 206
> Pichovirinae_59_Coral_002_Microviridae_AG0342_hypothetical.protein.BACEGG.02723
Length=233
Score = 20.0 bits (40), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 7/26 (27%), Positives = 13/26 (50%), Gaps = 0/26 (0%)
Query 4 ESWSQSDWYNAAQSWNQMLSSTGMTP 29
E W+ + YN ++ + L G+ P
Sbjct 36 EFWNMQNKYNTPKAQMERLKEAGLNP 61
> Alpavirinae_Human_feces_A_021_Microviridae_AG079_hypothetical.protein.BACEGG.02723
Length=397
Score = 20.0 bits (40), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
Query 6 WSQSDWYNAAQSWNQMLSSTGMTP 29
W++++ YN+A + L G+ P
Sbjct 35 WNKTNEYNSATNQRARLEEAGLNP 58
Lambda K H a alpha
0.309 0.125 0.376 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4609640