bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-27_CDS_annotation_glimmer3.pl_2_3
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_32_012_Microviridae_AG0208_putative.VP1 18.9 9.0
Alpavirinae_Human_gut_31_126_Microviridae_AG0306_putative.VP1 18.9 9.0
> Alpavirinae_Human_gut_32_012_Microviridae_AG0208_putative.VP1
Length=604
Score = 18.9 bits (37), Expect = 9.0, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 18 FVETVLKFEVLEKSVDVGSAGRMAH 42
+ +KF + +S G+A R+A+
Sbjct 109 YTSDTIKFSLNSESAAKGNAARLAN 133
> Alpavirinae_Human_gut_31_126_Microviridae_AG0306_putative.VP1
Length=604
Score = 18.9 bits (37), Expect = 9.0, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 18 FVETVLKFEVLEKSVDVGSAGRMAH 42
+ +KF + +S G+A R+A+
Sbjct 109 YTSDTIKFSLNSESAAKGNAARLAN 133
Lambda K H a alpha
0.321 0.136 0.366 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3675489