bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_3
Length=56
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_D_022_Microviridae_AG0390_hypothetical.... 23.5 0.11
Alpavirinae_Human_feces_A_033_Microviridae_AG0382_hypothetical.... 20.4 1.6
> Alpavirinae_Human_feces_D_022_Microviridae_AG0390_hypothetical.protein
Length=215
Score = 23.5 bits (49), Expect = 0.11, Method: Composition-based stats.
Identities = 7/26 (27%), Positives = 16/26 (62%), Gaps = 0/26 (0%)
Query 31 CTHKHILKANGIKIDTIKVETSTRIK 56
C++ + NGI DT+++E+ + +
Sbjct 54 CSYSQKVFRNGIHYDTVRIESKIKTR 79
> Alpavirinae_Human_feces_A_033_Microviridae_AG0382_hypothetical.protein
Length=192
Score = 20.4 bits (41), Expect = 1.6, Method: Composition-based stats.
Identities = 7/21 (33%), Positives = 14/21 (67%), Gaps = 0/21 (0%)
Query 31 CTHKHILKANGIKIDTIKVET 51
C++ + +G+ DT+KVE+
Sbjct 31 CSYTQKVFRHGVHHDTVKVES 51
Lambda K H a alpha
0.315 0.130 0.361 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3677548