bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Microviridae_proteins.fasta 575 sequences; 147,441 total letters Query= Contig-20_CDS_annotation_glimmer3.pl_2_1 Length=51 Score E Sequences producing significant alignments: (Bits) Value Alpavirinae_Human_feces_C_016_Microviridae_AG0276_hypothetical.... 65.1 2e-17 Alpavirinae_Human_feces_A_021_Microviridae_AG078_hypothetical.p... 18.1 8.2 > Alpavirinae_Human_feces_C_016_Microviridae_AG0276_hypothetical.protein Length=51 Score = 65.1 bits (157), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 32/51 (63%), Positives = 40/51 (78%), Gaps = 0/51 (0%) Query 1 MLDKDLILVVGLAELVAVNEYLRERGDEQVCSVLDGIVKGFRLILCNSKQK 51 MLD+ L+L+V L+ LVAV+EYLRERGDE V +VLD +V F+ IL N KQK Sbjct 1 MLDEKLVLMVNLSRLVAVSEYLRERGDEHVSAVLDRVVNAFQDILSNLKQK 51 > Alpavirinae_Human_feces_A_021_Microviridae_AG078_hypothetical.protein Length=63 Score = 18.1 bits (35), Expect = 8.2, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 0/20 (0%) Query 9 VVGLAELVAVNEYLRERGDE 28 V AEL A +E+L ++ E Sbjct 9 VQSHAELKAWSEFLTDKAKE 28 Lambda K H a alpha 0.324 0.144 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 3608307