bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-8_CDS_annotation_glimmer3.pl_2_4

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fri:FraEuI1c_5416  enoyl-CoA hydratase/isomerase                    38.5    3.1
  nev:NTE_02996  hypothetical protein                                 37.7    4.8
  cmk:103186888  rpusd1; RNA pseudouridylate synthase domain cont...  38.1    5.5


> fri:FraEuI1c_5416  enoyl-CoA hydratase/isomerase
Length=243

 Score = 38.5 bits (88),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 31/200 (16%)

Query  368  DIFTPVVDSEDISGRHIPNCAYPMVGLALKTYQSDVNTNWVNTEWLDGDSGINSITAIDT  427
            D    V+D+ D SG H    A  + G   + + S             GD  +  + AI T
Sbjct  30   DELEKVLDAVDSSGAH----ALAITGAGERAFISG------------GD--LKELAAIRT  71

Query  428  SGGSFTLDTLNLAKKVYTMLNRIAISDGSYNAWIQTVYTSGGLN-HIETPIYLGGSSLEI  486
              G+     +++A ++  + +RIA   G   A +      GG    +   I +    ++I
Sbjct  72   FEGA-----VDMALRMRGLCDRIANFPGPTIAAVNGHALGGGAEVAVAADIRIAAEGIQI  126

Query  487  EFQEV---VNNSGTEDQPLGTLAGRGVATNHKGGNIVFKADEPGYLFCITSITPRVDYFQ  543
             F +V   +  +    + L  + G+G A    GG +V  A E   L  +  + PR ++  
Sbjct  127  GFTQVMLAIMPAWGGSERLAAMVGKGKALMLAGGGLVVDAPEAARLGLVDKVLPRAEFDA  186

Query  544  GNEWDMYLESLDDLHKPQLD  563
            G  W     SL   H+P ++
Sbjct  187  G--WRAIARSL--AHQPAVE  202


> nev:NTE_02996  hypothetical protein
Length=188

 Score = 37.7 bits (86),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query  168  ILAYFDIFKNYYANK-----QEKSFYTIAGAQSLNTLNNPSSGDGIYFAAF-DVSASGDT  221
            I+A   I  NYYA++     QEK+ +TIA     +   N +SG+G Y  AF + S++G  
Sbjct  16   IVALSFIASNYYASQFLKEIQEKNMHTIAPGAKFDLQGNITSGNGAYVVAFPNYSSAGSV  75

Query  222  IINQIIQNPTADPMV  236
                 I +P  +P++
Sbjct  76   RATVSISDPDGEPVL  90


> cmk:103186888  rpusd1; RNA pseudouridylate synthase domain containing 
1
Length=311

 Score = 38.1 bits (87),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 17/117 (15%)

Query  3    VSIGKNTLGGGKKMMTR-----LNNYNRSTHDLSFVMRTSMAPGVLVPTLKMLMLP--GD  55
             +IGKNT  G   MM         N   S  +L  V++  +  G   P  K+L+ P  G 
Sbjct  116  CAIGKNTTEGLTHMMCTEGTQGCQNPKPSQTEL-IVLQRGLYSGD--PVTKVLLQPLTGR  172

Query  56   TFPVKTRCHTLTHPTVGPLFGSFKQQNDFFFCPIRLYNAMLHNNALNIGLDMKKVKL  112
            T  ++  C +L HP VG    SFK  ++        Y  MLH   L I ++ + +++
Sbjct  173  THQLRVHCSSLGHPIVGDFTYSFKTDSE-------PYRMMLHAYYLQIPIEGQPIEV  222



Lambda      K        H        a         alpha
   0.317    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1596084799516