bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-8_CDS_annotation_glimmer3.pl_2_1

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  pbo:PACID_27740  hypothetical protein                               35.0    1.5
  apb:SAR116_1415  hypothetical protein                               33.9    4.0


> pbo:PACID_27740  hypothetical protein
Length=598

 Score = 35.0 bits (79),  Expect = 1.5, Method: Composition-based stats.
 Identities = 15/42 (36%), Positives = 24/42 (57%), Gaps = 2/42 (5%)

Query  16   SAQHFKSEDEAIHWWARFPTSDEWEIIYLSERKRSGHRYALT  57
            S Q  K+EDE  HW+ + P  DE+E  ++ E +R+     +T
Sbjct  369  STQTPKTEDEHYHWYLKLPGQDEYE--WIPESRRAEQSLKIT  408


> apb:SAR116_1415  hypothetical protein
Length=372

 Score = 33.9 bits (76),  Expect = 4.0, Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 0/37 (0%)

Query  13   RIVSAQHFKSEDEAIHWWARFPTSDEWEIIYLSERKR  49
            R   +Q   S+D  I W  RFP  +E E +Y+ ++ R
Sbjct  72   RPAVSQRLNSKDGTIKWLLRFPDGNEAEAVYIPDKTR  108



Lambda      K        H        a         alpha
   0.322    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127437876688