bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-5_CDS_annotation_glimmer3.pl_2_3
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 45.4 0.038
slr:L21SP2_0608 hemin uptake system permease protein 39.3 2.9
ebf:D782_1397 putative acyltransferase 37.7 3.4
hoh:Hoch_3767 signal peptidase I 38.5 6.3
nfi:NFIA_018890 TBP associated factor (Mot1), putative 38.5 7.2
> fve:101314332 capsid protein VP1-like
Length=421
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 82/228 (36%), Gaps = 31/228 (14%)
Query 389 SGSANKDKQIKISAYSFRAYEGIYNAYIRDNRNNPYYVNGQVQYNKWIPTYDGGADQNIY 448
+G + SA RAY IYN + RD V + P+ + Y
Sbjct 164 AGQVGVSNTVSHSALPVRAYNLIYNQWFRDENLQNSVVVDKGDGPDTTPSTN-------Y 216
Query 449 ELRYANWEKDFLTTAVQSPQQG----TAPLVGITTYTETVETTSDDGTPVTRELSRIALV 504
L D+ T+A+ PQ+G + PL + + SD G T + + I +
Sbjct 217 TLLRRGKRHDYFTSALPWPQKGGTAVSLPLGTSAPIAFSGASGSDVGVISTTQGNLIKNM 276
Query 505 DEDGKKYQVSFDSDS--EGLKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQ 562
G + S + GL Y +L + +IN LR Q
Sbjct 277 YSTGSGTSLKIGSATVATGL----YADLS--------------AATAATINQLRQSFQIQ 318
Query 563 KFLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSI 610
K LE + R G Y +II F V L PE+ GG S I + I
Sbjct 319 KLLERDARGGTRYTEIIRSHFGVASPDARLQRPEYLGGGSTPINIAPI 366
> slr:L21SP2_0608 hemin uptake system permease protein
Length=361
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/112 (34%), Positives = 51/112 (46%), Gaps = 9/112 (8%)
Query 96 FREDLEEPYLDLNTVTRLDAMAKTGSLGDYL-GLPTTLFGKFGTTLSVATTGHIFGLKGN 154
F L +PY + + A A G++ +L GLPT +G F +SV+TT IF L N
Sbjct 114 FHNPLADPY-----IIGISASAVAGAVTAFLLGLPTIFYGIFAFVVSVSTTFLIFRLAMN 168
Query 155 QFNGSDQMQYISGVPIDSVSNLRAFLSLKPLSIDTPSQR-ISWTVVSPGSAS 205
I GV + + L AF S +I S R I WT+ G AS
Sbjct 169 GGQTRITSLLIIGVAVSAF--LGAFTSFAMYAIGEDSYRIIVWTMGYLGGAS 218
> ebf:D782_1397 putative acyltransferase
Length=153
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 32/130 (25%), Positives = 53/130 (41%), Gaps = 24/130 (18%)
Query 587 VRYDELLMPEFFGGFSRDIEMHSISQT-VDQDLDGSQTYAKALGSQSGIAGVRGDS---- 641
+ + +L +P+ + E+ + Q V QD+DG +G + G +GD+
Sbjct 7 LHHSDLTVPQLYALLQLRCEVFVVEQACVYQDIDGDDL----VGENRHLLGWQGDTLVAY 62
Query 642 GRALECFCDEESIVMGILIVTP---------------LPVYTQLLPKHFTYRGLLDHYQP 686
R L+ D + +G +IV+P L Q P+H Y G H Q
Sbjct 63 ARLLKSEDDFSPVSIGRVIVSPAVRGEKLGYQLMERALASCAQHWPEHALYLGAQAHLQN 122
Query 687 EFNHIGFQPI 696
+ H GF P+
Sbjct 123 FYRHFGFIPV 132
> hoh:Hoch_3767 signal peptidase I
Length=380
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query 104 YLDLNTVTRL-DAMAKTGSLGDYLGLPTTLFGKFGTTL----SVATTGHIFGLKGNQFNG 158
+ D N + R D ++ S+G Y P T G G V GH+FG+ N+ N
Sbjct 280 FPDFNRIPRCADHSEESSSIGCYAPSPQTQKGDAGACALQRHYVVPEGHVFGMGDNRENS 339
Query 159 SDQMQYISGVPIDSVSNLRAFL 180
SD Q+ VP+D++ F+
Sbjct 340 SDSRQW-GPVPLDNIKGKALFI 360
> nfi:NFIA_018890 TBP associated factor (Mot1), putative
Length=1920
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (47%), Gaps = 5/90 (6%)
Query 513 VSFDSDSEG-LKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQKFLELNMRK 571
+ DS SEG L G SYV + Q + ++D+V S + L+ + +FL L+
Sbjct 1683 IGVDSPSEGDLSGASYVSPHRALIFCQMKEMLDIVQSEV----LKKLLPSVQFLRLDGSV 1738
Query 572 GYSYRDIIEGRFNVKVRYDELLMPEFFGGF 601
+ R I RFN YD LL+ GG
Sbjct 1739 EATKRQDIVNRFNTDPSYDVLLLTTSVGGL 1768
Lambda K H a alpha
0.319 0.137 0.408 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1998536222709