bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-37_CDS_annotation_glimmer3.pl_2_4

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  pkc:PKB_4374  nodW; Nodulation protein W                            34.3    1.1
  svo:SVI_2173  response regulator                                    32.3    6.5


> pkc:PKB_4374  nodW; Nodulation protein W
Length=220

 Score = 34.3 bits (77),  Expect = 1.1, Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query  5   VLKHAKNNDPQRPVEPVVYVVEEAELLHFLHENLKPSSG-NVLVFDS  50
           ++  + +N PQ P EPVVYVV++ E +    + L  S G  V  FDS
Sbjct  1   MISSSHSNPPQGPKEPVVYVVDDDESMRLALDGLLRSIGLQVQTFDS  47


> svo:SVI_2173  response regulator
Length=530

 Score = 32.3 bits (72),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 0/53 (0%)

Query  2    LFKVLKHAKNNDPQRPVEPVVYVVEEAELLHFLHENLKPSSGNVLVFDSFPEE  54
            +F  L HA+   P  P++ V+ V+EE    HF  E LK    N+ VF    +E
Sbjct  466  VFDALSHARCYKPAWPIDEVMKVMEEGAGSHFDPELLKVFIDNINVFTQVKDE  518



Lambda      K        H        a         alpha
   0.316    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129060834644