bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_4
Length=421
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 66.6 2e-10
cpt:CpB0227 hypothetical protein 65.5 4e-10
cpj:CPj0222 hypothetical protein 65.5 4e-10
cpa:CP0543 hypothetical protein 65.5 4e-10
cpn:CPn0222 hypothetical protein 65.5 4e-10
smo:SELMODRAFT_112650 hypothetical protein 37.7 4.8
smo:SELMODRAFT_404685 hypothetical protein 37.7 4.9
dok:MED134_06319 hypothetical protein 36.6 8.3
mvo:Mvol_0445 hypothetical protein 36.6 9.8
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 35/130 (27%)
Query 43 TLVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGF 102
L+PC +C CR ++VW+ R + E + K F+TLTY+D+ LP
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYE-KNCFLTLTYDDKHLPQ------------ 66
Query 103 YEDVVPLVLDDDEEWIAAAAGAPATLSIRDTQLFMKRLRKTFRDRRLRFFLAGEYGPKTH 162
Y +V L L QLF+KRLR ++R+F GEYG K
Sbjct 67 YGSLVKLHL----------------------QLFLKRLRDRISPHKIRYFGCGEYGTKLQ 104
Query 163 RPHYHAIIYG 172
RPHYH +I+
Sbjct 105 RPHYHLLIFN 114
> cpt:CpB0227 hypothetical protein
Length=113
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 59/128 (46%), Gaps = 35/128 (27%)
Query 43 TLVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGF 102
L+PC +C CR ++VW+ R + E + K F+TLTY+D+ LP
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYE-KNCFLTLTYDDKHLPQ------------ 66
Query 103 YEDVVPLVLDDDEEWIAAAAGAPATLSIRDTQLFMKRLRKTFRDRRLRFFLAGEYGPKTH 162
Y +V L L QLF+KRLRK ++R+F G YG K
Sbjct 67 YGSLVKLHL----------------------QLFLKRLRKMISPHKIRYFECGAYGTKLQ 104
Query 163 RPHYHAII 170
RPHYH ++
Sbjct 105 RPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 59/128 (46%), Gaps = 35/128 (27%)
Query 43 TLVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGF 102
L+PC +C CR ++VW+ R + E + K F+TLTY+D+ LP
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYE-KNCFLTLTYDDKHLPQ------------ 66
Query 103 YEDVVPLVLDDDEEWIAAAAGAPATLSIRDTQLFMKRLRKTFRDRRLRFFLAGEYGPKTH 162
Y +V L L QLF+KRLRK ++R+F G YG K
Sbjct 67 YGSLVKLHL----------------------QLFLKRLRKMISPHKIRYFECGAYGTKLQ 104
Query 163 RPHYHAII 170
RPHYH ++
Sbjct 105 RPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 59/128 (46%), Gaps = 35/128 (27%)
Query 43 TLVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGF 102
L+PC +C CR ++VW+ R + E + K F+TLTY+D+ LP
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYE-KNCFLTLTYDDKHLPQ------------ 66
Query 103 YEDVVPLVLDDDEEWIAAAAGAPATLSIRDTQLFMKRLRKTFRDRRLRFFLAGEYGPKTH 162
Y +V L L QLF+KRLRK ++R+F G YG K
Sbjct 67 YGSLVKLHL----------------------QLFLKRLRKMISPHKIRYFECGAYGTKLQ 104
Query 163 RPHYHAII 170
RPHYH ++
Sbjct 105 RPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 59/128 (46%), Gaps = 35/128 (27%)
Query 43 TLVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGF 102
L+PC +C CR ++VW+ R + E + K F+TLTY+D+ LP
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYE-KNCFLTLTYDDKHLPQ------------ 66
Query 103 YEDVVPLVLDDDEEWIAAAAGAPATLSIRDTQLFMKRLRKTFRDRRLRFFLAGEYGPKTH 162
Y +V L L QLF+KRLRK ++R+F G YG K
Sbjct 67 YGSLVKLHL----------------------QLFLKRLRKMISPHKIRYFECGAYGTKLQ 104
Query 163 RPHYHAII 170
RPHYH ++
Sbjct 105 RPHYHLLL 112
> smo:SELMODRAFT_112650 hypothetical protein
Length=509
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/123 (23%), Positives = 54/123 (44%), Gaps = 1/123 (1%)
Query 256 GLLHADDLLKKGDKTFIRDIDLNGKECTREVYLGRAFIRSAAREHMKPVFAAADLVESVQ 315
GL++ D++L++ D + DL + T +++L + + KPV A ++ES+
Sbjct 246 GLVNFDEILRESDAIMVARGDLGMEIPTEKIFLAQKMMIYKCNAAGKPVITATQMLESMI 305
Query 316 TCINELEAESCTEHEDVLDALYICLRAFRHRLDDVIELHIPPSVRLC-SRQNERAYNSIQ 374
C AE+ VLD + + EL + ++C +N Y +I
Sbjct 306 KCPRPTRAEATDVANAVLDGTDAVMLSGETAAGLYPELAVATMAKICVEAENSLDYPAIF 365
Query 375 RSI 377
++I
Sbjct 366 KAI 368
> smo:SELMODRAFT_404685 hypothetical protein
Length=509
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/123 (23%), Positives = 54/123 (44%), Gaps = 1/123 (1%)
Query 256 GLLHADDLLKKGDKTFIRDIDLNGKECTREVYLGRAFIRSAAREHMKPVFAAADLVESVQ 315
GL++ D++L++ D + DL + T +++L + + KPV A ++ES+
Sbjct 246 GLVNFDEILRESDAIMVARGDLGMEIPTEKIFLAQKMMIYKCNAAGKPVITATQMLESMI 305
Query 316 TCINELEAESCTEHEDVLDALYICLRAFRHRLDDVIELHIPPSVRLC-SRQNERAYNSIQ 374
C AE+ VLD + + EL + ++C +N Y +I
Sbjct 306 KCPRPTRAEATDVANAVLDGTDAVMLSGETAAGLYPELAVATMAKICVEAENSLDYPAIF 365
Query 375 RSI 377
++I
Sbjct 366 KAI 368
> dok:MED134_06319 hypothetical protein
Length=288
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (49%), Gaps = 16/78 (21%)
Query 52 GCRLDRSRVWADRMLLE---------LKDNDYKALFVTLTYNDRSLPSAWHVGSN--YFD 100
GC +R RV + E LK++ Y AL+ T T +RS+ S GSN YFD
Sbjct 68 GCGTERPRVLMRSVFDEIFTQATDIVLKEDTYAALYATATEGERSIVSILGTGSNCSYFD 127
Query 101 G--FYEDVVPL---VLDD 113
G + VV L V+DD
Sbjct 128 GTDIIQKVVSLGYVVMDD 145
> mvo:Mvol_0445 hypothetical protein
Length=493
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (5%)
Query 140 LRKTFRDRRLRFFLAGEYGPKTHRPHYHAIIYGLTLSDFKDCR 182
+RKT +R+L + + E+ PK PH H +I+G D +D R
Sbjct 256 IRKT--NRKLEYIYSFEFSPKKALPHLHVVIFGTDFLDLRDYR 296
Lambda K H a alpha
0.325 0.140 0.443 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 864851519007