bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-23_CDS_annotation_glimmer3.pl_2_5

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101297601  minor spike protein H-like                           72.4    5e-13


> fve:101297601  minor spike protein H-like
Length=139

 Score = 72.4 bits (176),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 35/55 (64%), Positives = 42/55 (76%), Gaps = 1/55 (2%)

Query  129  AEALANREFQERMSNTAYQRTVEDMKKAGLNPILAFAN-GGASTPGGSTATISGA  182
            AEA  NREFQER+SN+AYQR V D+  AGLNP+LA+   GGASTP GST  ++ A
Sbjct  24   AEAQRNREFQERLSNSAYQRQVADLSSAGLNPMLAYIKGGGASTPSGSTGQVTSA  78



Lambda      K        H        a         alpha
   0.306    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492458942508