bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-19_CDS_annotation_glimmer3.pl_2_4
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 41.2 0.070
tsc:TSC_c05760 leucine-, isoleucine-, valine-, threonine-, and... 42.0 0.16
ttj:TTHA0451 branched-chain amino acid ABC transporter substra... 41.6 0.22
tth:TTC0082 leucine-, isoleucine-, valine-, threonine-, and al... 41.2 0.31
ttl:TtJL18_1630 branched-chain amino acid ABC transporter subs... 40.8 0.45
cpt:CpB0227 hypothetical protein 38.5 0.51
cpj:CPj0222 hypothetical protein 38.5 0.51
cpa:CP0543 hypothetical protein 38.5 0.51
cpn:CPn0222 hypothetical protein 38.5 0.51
pvu:PHAVU_001G149600g hypothetical protein 40.4 0.69
gmx:100793183 mRNA-capping enzyme-like 38.5 2.7
afo:Afer_0101 phosphoenolpyruvate carboxylase (EC:4.1.1.31) 38.5 3.0
tts:Ththe16_0451 leucine-, isoleucine-, valine-, threonine-, a... 37.4 5.1
ndi:NDAI_0C04630 NDAI0C04630; hypothetical protein 37.4 8.2
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/49 (45%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query 156 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILLF 204
G L +QLF KRL I + KI Y+ GEYG RPH+H+L+F
Sbjct 68 GSLVKLHLQLFLKRLRDRI---SPHKIRYFGCGEYGTKLQRPHYHLLIF 113
> tsc:TSC_c05760 leucine-, isoleucine-, valine-, threonine-, and
alanine-binding protein
Length=398
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/89 (33%), Positives = 40/89 (45%), Gaps = 16/89 (18%)
Query 144 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 196
R Y RP EN I +NY + L +R + + VTNE +Y +VG GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRVTNETVYQALVGMNGPNAFK 343
Query 197 PHFHILLFHDSKELRQSIRQFVSKSWRFG 225
P F + +Q I +KS R G
Sbjct 344 PGFAV-------STKQGIEIDFTKSERTG 365
> ttj:TTHA0451 branched-chain amino acid ABC transporter substrate-binding
protein
Length=407
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/65 (34%), Positives = 32/65 (49%), Gaps = 9/65 (14%)
Query 144 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 196
R Y RP EN I +NY + L +R + + +TNE +Y +VG GP F+
Sbjct 295 RKYGRP--ENFIESVNYTNGMLVASIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFK 352
Query 197 PHFHI 201
P F +
Sbjct 353 PGFAV 357
> tth:TTC0082 leucine-, isoleucine-, valine-, threonine-, and
alanine-binding protein
Length=398
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/65 (34%), Positives = 32/65 (49%), Gaps = 9/65 (14%)
Query 144 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 196
R Y RP EN I +NY + L +R + + +TNE +Y +VG GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFK 343
Query 197 PHFHI 201
P F +
Sbjct 344 PGFAV 348
> ttl:TtJL18_1630 branched-chain amino acid ABC transporter substrate-binding
protein
Length=398
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (14%)
Query 144 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 196
R Y RP EN I +NY + L +R + + +TNE +Y ++G GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIIGMNGPNAFK 343
Query 197 PHFHI 201
P F +
Sbjct 344 PGFAV 348
> cpt:CpB0227 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 156 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 203
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 156 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 203
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 156 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 203
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 156 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 203
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> pvu:PHAVU_001G149600g hypothetical protein
Length=679
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query 62 ITLTYSTEYLPVGEFYKGASGEVRFRCLPRDFVYSYKTVQGYNRNISFNDEYFDFDTQLS 121
I LT +T Y P+ ++ K G V+ RC RD V ++V+ F DE DF +Q +
Sbjct 145 IDLTNTTRYYPLSDWTKEGIGHVKIRCKGRDAVPDDESVK------QFCDEVQDFCSQRT 198
Query 122 WESAQLLQKKTHLH 135
E +L TH H
Sbjct 199 NEKKYILVHCTHGH 212
> gmx:100793183 mRNA-capping enzyme-like
Length=645
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/74 (34%), Positives = 36/74 (49%), Gaps = 6/74 (8%)
Query 62 ITLTYSTEYLPVGEFYKGASGEVRFRCLPRDFVYSYKTVQGYNRNISFNDEYFDFDTQLS 121
I LT +T Y PV ++ K G V+ RC RD V ++V+ F D+ DF +Q +
Sbjct 100 IDLTNTTRYYPVSDWTKEGIGHVKIRCTGRDAVPDDESVK------FFCDKVLDFCSQRT 153
Query 122 WESAQLLQKKTHLH 135
+L TH H
Sbjct 154 NTKKYILVHCTHGH 167
> afo:Afer_0101 phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Length=772
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 30/68 (44%), Gaps = 0/68 (0%)
Query 221 SWRFGDTDTQPVWSSASCYVAGYVNSTACLPDFYKNFSHIKPFGRFSMHFAESAFNEVFK 280
SW GD D P+ ++ A N+TACL F +K SMHFA + V
Sbjct 126 SWIGGDRDGNPLVTAEVTKAAFVANATACLEAFRSRLDAVKRRLTHSMHFAAVSDAIVES 185
Query 281 PQEDEEIF 288
+ DE F
Sbjct 186 IRNDEHDF 193
> tts:Ththe16_0451 leucine-, isoleucine-, valine-, threonine-,
and alanine-binding protein
Length=398
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 9/65 (14%)
Query 144 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 196
R Y RP EN I +NY + L +R + + +TNE +Y ++G GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIIGMNGPNAFK 343
Query 197 PHFHI 201
F +
Sbjct 344 SGFAV 348
> ndi:NDAI_0C04630 NDAI0C04630; hypothetical protein
Length=3755
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (46%), Gaps = 20/137 (15%)
Query 262 PFGRFSMHFAESAFNEVFKPQEDEEIFSLFYDGRMLELNGKPTLVRPKRSHINRL-YPRL 320
P S+ + NE FK DE++F L +L ++G + NRL +PR
Sbjct 3230 PLLALSLESLVAQINERFKNNTDEDLFRLI---NVLLIDGT--------FNYNRLPFPRN 3278
Query 321 NKSKHASVDDDIRVATALSNIPHVLAKFG--FIDEVTDFEM-SKRIYYLIRRYLEIDHTL 377
N +S +++ + PH+ KF FIDE DFE KR+ Y RR +++ L
Sbjct 3279 NPPLPSSTANNLARLSETLLAPHIRPKFNADFIDEKPDFETYIKRLRYWRRR---LENKL 3335
Query 378 KYAP--EQLRLIYNYLS 392
AP E L I +LS
Sbjct 3336 DRAPHVESLEKICPHLS 3352
Lambda K H a alpha
0.325 0.140 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 799755168114