bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-19_CDS_annotation_glimmer3.pl_2_1 Length=75 Score E Sequences producing significant alignments: (Bits) Value acan:ACA1_038110 glycosyltransferase family 8 protein 34.3 1.6 tvi:Thivi_0967 phosphate ABC transporter substrate-binding pro... 33.1 3.4 eus:EUTSA_v10014889mg hypothetical protein 32.3 5.1 mis:MICPUN_82381 hypothetical protein 32.3 8.1 > acan:ACA1_038110 glycosyltransferase family 8 protein Length=478 Score = 34.3 bits (77), Expect = 1.6, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (55%), Gaps = 0/51 (0%) Query 1 LPPVDSDYMHVFFGDVVPEEGSPILSYTWFKVNPSVLNPIFGVAVDGSWNS 51 LPPV S ++ ++ VP G P Y W + P+ L+P+ G ++ +W + Sbjct 276 LPPVFSKHLSIWLFGAVPLLGIPAALYRWDVLLPTALSPLIGWSLFFAWTA 326 > tvi:Thivi_0967 phosphate ABC transporter substrate-binding protein Length=349 Score = 33.1 bits (74), Expect = 3.4, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (46%), Gaps = 9/68 (13%) Query 9 MHVFFGDVVPEEGSPILSYTWFKVNPSVLNPIFGVAVDG--SWNSDQLLCNCQFNVKVAR 66 + +F D E PI+SYTW +N +P G A+ +W DQ VAR Sbjct 274 LRLFVPDPEGAEAYPIVSYTWILLNEHYADPAKGTALKDALTWGLDQ-------GQVVAR 326 Query 67 NLSYDGMP 74 +L Y +P Sbjct 327 DLGYVPLP 334 > eus:EUTSA_v10014889mg hypothetical protein Length=161 Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust. Identities = 14/37 (38%), Positives = 23/37 (62%), Gaps = 1/37 (3%) Query 16 VVPEEGSPILS-YTWFKVNPSVLNPIFGVAVDGSWNS 51 ++P++ PIL+ WF + P + P GV DGSW++ Sbjct 53 LLPQQTDPILNPREWFYLGPKWVRPFQGVYFDGSWDA 89 > mis:MICPUN_82381 hypothetical protein Length=457 Score = 32.3 bits (72), Expect = 8.1, Method: Composition-based stats. Identities = 17/45 (38%), Positives = 26/45 (58%), Gaps = 2/45 (4%) Query 30 FKVNPSVLNPIFGVAVDG--SWNSDQLLCNCQFNVKVARNLSYDG 72 FKV P +L+P+ A G S+N D + + N+ VAR+L+ D Sbjct 39 FKVGPDLLDPLLHEAATGKPSYNLDGWMLTKEHNLSVARSLAGDA 83 Lambda K H a alpha 0.321 0.141 0.466 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 129540415317