bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-12_CDS_annotation_glimmer3.pl_2_1

Length=56
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ath:AT5G43400  hypothetical protein                                 33.1    2.8
  aly:ARALYDRAFT_917317  hypothetical protein                         32.7    4.6


> ath:AT5G43400  hypothetical protein
Length=655

 Score = 33.1 bits (74),  Expect = 2.8, Method: Composition-based stats.
 Identities = 21/53 (40%), Positives = 28/53 (53%), Gaps = 4/53 (8%)

Query  5    TDIQSV--RVLHYAVSTDYVEDFTQMIKDTFVHPDISFTDIIYSSDSRQFFQL  55
            TD Q V  R+L  AV  +  +D  QMIK  FV  D+ F D + +S S   + L
Sbjct  503  TDFQIVFDRILEVAVENNLTDD--QMIKRLFVFSDMEFDDAMANSHSEVSYHL  553


> aly:ARALYDRAFT_917317  hypothetical protein
Length=657

 Score = 32.7 bits (73),  Expect = 4.6, Method: Composition-based stats.
 Identities = 20/53 (38%), Positives = 29/53 (55%), Gaps = 4/53 (8%)

Query  5    TDIQSV--RVLHYAVSTDYVEDFTQMIKDTFVHPDISFTDIIYSSDSRQFFQL  55
            TD Q V  R+L  AV  +  ++  QMIK  FV  D+ F D + +S S   ++L
Sbjct  505  TDFQKVFDRILEVAVENNLTDE--QMIKRLFVFSDMEFDDAMANSHSEVSYRL  555



Lambda      K        H        a         alpha
   0.329    0.140    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127142967006