bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-4_CDS_annotation_glimmer3.pl_2_7 Length=174 Score E Sequences producing significant alignments: (Bits) Value 391603.FBALC1_09302 38.1 0.71 > 391603.FBALC1_09302 Length=405 Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust. Identities = 29/122 (24%), Positives = 52/122 (43%), Gaps = 18/122 (15%) Query 20 IYARIHKHARGELRDNRLRRPCRQPFGHVVINLRQRHFRHVLSVICQSHKITILMIIFYK 79 +YAR A G D ++ L F + I ++ KI IL+I+FY Sbjct 146 VYARELDRAEGLYGDAN-----NAALASIIAYLLFDKFFKPWNFITKASKILILLILFYS 200 Query 80 VTLLCGSVSFFYQTIGALSTVDLYKFSCIFILNHSWMLTFVKILKYSIIHKIFYLGVTAT 139 V L ST L+ F+ +F + + T ++++ + ++ +FY G+ A Sbjct 201 VFL-------------TFSTTGLFVFTIVFFITNYKFFTGIRLILFGVLIALFYAGIFAL 247 Query 140 RS 141 +S Sbjct 248 KS 249 Lambda K H a alpha 0.337 0.146 0.461 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 143714426400