bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-38_CDS_annotation_glimmer3.pl_2_2 Length=346 Score E Sequences producing significant alignments: (Bits) Value 7165.AGAP010934-PA 39.7 1.1 > 7165.AGAP010934-PA Length=1919 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 39/181 (22%), Positives = 76/181 (42%), Gaps = 24/181 (13%) Query 148 WQLTKTLFENWIDGYR--FYGSYVNEKTINYVSKYMTKKDEDNPDYIGIVLCSKGLGANY 205 W+LT T + R ++ ++V TI ++ K + E NP I +L + + + Sbjct 703 WKLTMTWANKFYREVRSSWHSNHVESVTIEWMEKRLL---EYNPSVIAGILKNGSISMDC 759 Query 206 AKRMAYKHEWNK-------EKTNITYKAKNGADLPLPRYYKTQLYTEDQRQLLWLYAEDE 258 A+ Y K E I +A + L YY + +++ ++L + ++ Sbjct 760 AEEFDYVEHTRKLLEQLGLEVDTIGEEALQQLNKRLKPYYNNMFFVDNKWKVLEAFCKER 819 Query 259 GVKWVKGFKVQGANGANKDYYETLVKQKNEEGAPLHGDVEEEIIRKKAINRMYKLQSLTQ 318 + W +K+ TLV++ EE L+ + EE+ + N ++ L LT+ Sbjct 820 KLVW------------SKELTRTLVRKDQEELQQLYDERREELRQLLKANELHSLDGLTR 867 Query 319 R 319 R Sbjct 868 R 868 Lambda K H a alpha 0.319 0.136 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 624184756540