bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-36_CDS_annotation_glimmer3.pl_2_5 Length=60 Score E Sequences producing significant alignments: (Bits) Value 7460.GB10563-PA 33.1 2.6 > 7460.GB10563-PA Length=307 Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/55 (33%), Positives = 32/55 (58%), Gaps = 1/55 (2%) Query 2 NKQALGEALKERLAKIQLEKQ-KTLEQLWNIELTEQATLEKMRRHGMFMEKDDLP 55 +K LG K+ ++ + KQ K +E+L NI E +E++RR +F++K + P Sbjct 182 DKGVLGVNFKKLRPRVTVLKQSKVIEELQNIATAEPPLVEQLRRTSVFLQKPERP 236 Lambda K H a alpha 0.312 0.127 0.346 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 124786029600